Logo
Information on SUBCLASS 2.2.8
Subclass Accession number: 6053
Subclass: 2.2.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 8.9 +/- 13.3
Average RMSD (Å) : 0.357 +/- 0.224

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXppX
(φψ)-conformation: bbaabb
Pattern: xx[dgnqst][adegkrs][dhknqsty][eknqrstw][afikl]x
Conservation:-1.8870.1860.9970.5810.879-1.0840.350-0.022
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a78_A_301a78   A3643GEDASNFLEEETTEEEeabaabba
1bkb_*_851bkb   -8592SVSGDVIQEE-SS-EEbbbaabbx
1c1l_A_291c1l   A3542GESMNSLSEEETTEEEeabaabba
1eu3_A_181eu3   A2734FKTSHNLVEEETTEEEbbbaabbb
1fna_*_91fna   -1219AATPTSLLEE-SS-EEbbbaabbb
1g0x_A_1521g0x   A152158.RGSSRAI.EETTEEE.bbaabbb
1iy9_A_141iy9   A2734EQTEFQHLEE-SS-EEbxxaabxx
1ju3_A_2931ju3   A293298.RNADRK..EETTEE..bbaabb.
1k38_A_1931k38   A195202EAGRNWILEEETTEEEbbbaabbb
1mhm_A_751mhm   A7683FVYSYKIIEEETTEEEbbbaabbb
1qba_*_2891qba   -292299KIGKKEAQEE-SS-EEbbbaabbb
1zxq_*_411zxq   -4653DEQAQWKHEEETTEEEbbbaabbb
2aaa_*_3852aaa   -388395YTDSNTIAEEETTEEEbbbaabbb
7taa_*_3857taa   -388395YKDDTTIAEEETTEEEbbbaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a78_A_301a78   A     TDGTHIODIGALACTOSIDE H - 45
1a78_A_301a78   A     TDGTHIODIGALACTOSIDE N - 47
1a78_A_301a78   A     TDGTHIODIGALACTOSIDE R - 49
1bkb_*_851bkb   *     MSESELENOMETHIONINE V - 86
1bkb_*_851bkb   *     MSESELENOMETHIONINE S - 87
1bkb_*_851bkb   *     MSESELENOMETHIONINE G - 88
1bkb_*_851bkb   *     MSESELENOMETHIONINE D - 89
1bkb_*_851bkb   *     MSESELENOMETHIONINE V - 90
1bkb_*_851bkb   *     MSESELENOMETHIONINE I - 91
1bkb_*_851bkb   *     MSESELENOMETHIONINE Q - 92
1c1l_A_291c1l   A     GALD-GALACTOSE R - 29
1c1l_A_291c1l   A     GLCGLUCOSE R - 29
1c1l_A_291c1l   A     GALD-GALACTOSE H - 44
1c1l_A_291c1l   A     GALD-GALACTOSE D - 46
1c1l_A_291c1l   A     GALD-GALACTOSE R - 48
1c1l_A_291c1l   A     GLCGLUCOSE R - 48
1c1l_A_291c1l   A     GALD-GALACTOSE Y - 51
1c1l_A_291c1l   A     GLCGLUCOSE Y - 51
1k38_A_1931k38   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 205
1k38_A_1931k38   A     FMTFORMIC ACID K - 205
1k38_A_1931k38   A     FMTFORMIC ACID T - 206
1k38_A_1931k38   A     FMTFORMIC ACID G - 207
1k38_A_1931k38   A     FMTFORMIC ACID W - 208
1mhm_A_751mhm   A     PVLPYRUVOYL GROUP L - 75
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 41
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE D - 46
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE Q - 48
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE Q - 50
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE W - 51
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE K - 52
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE H - 53
1zxq_*_411zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 58

Clusters included in this Subclass
CLUSTER: HA.3.54