ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.9

Subclass Accession number: 6054
Subclass: 2.2.9

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 5.8 +/- 9.0
Average RMSD (Å) : 0.600 +/- 0.154

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XXXXXX
(φψ)-conformation:	bbaabb

Pattern:	[ACFIKV]	x	x	x	x	x	x	x	x	x	x
Conservation:	1.840	-0.090	-0.120	-1.356	0.115	1.633	0.350	-1.213	-0.249	-0.462	-0.447

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1x_*_29	1a1x	-	33	43	VVEEETSFLRA	EEEE-SS-EEE	bxbxxaabbbb
1cbs_*_49	1cbs	-	52	62	IKTSTTVRTTE	EEEE-SS-EEE	bbbbbaabbbb
1i7q_A_383	1i7q	A	389	399	KVDRYSFVMHL	EEEE-SS-EEE	bbbbbaabbbx
1iil_E_338	1iil	E	342	352	CLAGNSIGISF	EEEE-SS-EEE	bbbbbaabbbb
1jey_B_404	1jey	B	409	419	FPHIKHNYECL	EEEE-SS-EEE	bwbbbaabbbb
1jsm_A_198	1jsm	A	198	208	VSVGTSTLNQR	EEEE-SS-EEE	bbbbbaaxbbb
1kuu_A_112	1kuu	A	114	124	AAAINGSEAFI	EEEE-SS-EEE	bbbbbaabbbb
1lid_*_48	1lid	-	51	61	IRSESTFKNTE	EEEE-SS-EEE	bbbbbaabbbb
1mzu_A_89	1mzu	A	94	104	FVFDFQMAPVR	EEEE-SS-EEE	bbxxxaabwbx
1p3c_A_22	1p3c	A	23	33	AYITFGGSSCT	EEEE-SS-EEE	bxbbbaabbbb
1q1j_H_88	1q1j	H	98	108	IMIRGVSEDYY	EEEE-SS-EEE	bbbxxaabbxb
2cd0_A_84	2cd0	A	88	98	CQSYDHNNQVF	EEEEETTEEEE	xbbbbaabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cbs_*_49	1cbs	*	REARETINOIC ACID	T - 54
1cbs_*_49	1cbs	*	REARETINOIC ACID	S - 55
1cbs_*_49	1cbs	*	REARETINOIC ACID	T - 56
1cbs_*_49	1cbs	*	REARETINOIC ACID	V - 58
1cbs_*_49	1cbs	*	REARETINOIC ACID	R - 59
1i7q_A_383	1i7q	A	BEZBENZOIC ACID	H - 398
1i7q_A_383	1i7q	A	PYRPYRUVIC ACID	H - 398
1jsm_A_198	1jsm	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 203
1lid_*_48	1lid	*	OLAOLEIC ACID	S - 53
1lid_*_48	1lid	*	OLAOLEIC ACID	S - 55
1lid_*_48	1lid	*	OLAOLEIC ACID	F - 57
1lid_*_48	1lid	*	OLAOLEIC ACID	K - 58
1mzu_A_89	1mzu	A	HC44'-HYDROXYCINNAMIC ACID	F - 96
1mzu_A_89	1mzu	A	HC44'-HYDROXYCINNAMIC ACID	D - 97
1mzu_A_89	1mzu	A	HC44'-HYDROXYCINNAMIC ACID	F - 98

Clusters included in this Subclass

CLUSTER: HA.3.91

CLUSTER: HA.4.118

CLUSTER: HA.5.157