ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.10

Subclass Accession number: 6055
Subclass: 2.2.10

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 20.0 +/- 19.4
Average RMSD (Å) : 0.355 +/- 0.113

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXXXGX
(φψ)-conformation:	bbaaeb

Pattern:	[AEGKNS]	[dgnst]	x	x	[GK]	x
Conservation:	-0.065	0.035	-0.711	-0.508	1.938	-0.688

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1deu_A_69	1deu	A	69	74	GSCEGG	EETBEE	ebaaeb
1dgw_A_56	1dgw	A	61	66	KNQHGS	EETTEE	bbaaeb
1ei5_A_447	1ei5	A	453	458	EGFLGK	EETTEE	bbaaeb
1fl0_A_229	1fl0	A	231	236	SSPEKI	EETTEE	bbaaeb
1fmt_A_264	1fmt	A	267	272	ANKQGI	EETTEE	bbaaeb
1jae_*_68	1jae	-	68	73	NTRSGD	EETTEE	bbaaex
1jak_A_94	1jak	A	98	103	SGPAGV	EETTEE	bbaaeb
1r0u_A_82	1r0u	A	88	93	KMSFGE	EETTEE	bbaaeb
1vi4_A_144	1vi4	A	147	152	ADWNGI	EETTEE	bbaaeb
2phl_A_22	2phl	A	27	32	KNQYGH	EETTEE	bbaaeb
2phl_A_221	2phl	A	223	228	GNEFGN	EETTEE	ebaaeb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1vi4_A_144	1vi4	A	MSESELENOMETHIONINE	Y - 144
1vi4_A_144	1vi4	A	MSESELENOMETHIONINE	L - 145
1vi4_A_144	1vi4	A	MSESELENOMETHIONINE	Y - 146
1vi4_A_144	1vi4	A	MSESELENOMETHIONINE	I - 152
2phl_A_22	2phl	A	PO4PHOSPHATE ION	H - 32
2phl_A_22	2phl	A	PO4PHOSPHATE ION	R - 34
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 221
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 223
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 224
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 225
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 226
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 227
2phl_A_221	2phl	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 228

Clusters included in this Subclass

CLUSTER: HA.1.26