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Information on SUBCLASS 2.2.17
Subclass Accession number: 6062
Subclass: 2.2.17 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 7.1 +/- 11.9
Average RMSD (Å) : 0.463 +/- 0.226

Consensus geometry
d (Å): 3 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXppX
(φψ)-conformation: bpaaba
Pattern: x[dehqsy]x[adknq][denqr]x[dhnst]xx
Conservation:-1.1750.137-1.1101.2561.166-0.6771.110-0.8480.142
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1abr_B_1861abr   B187195RSVQNTNNCEETTEEEEExxaabaabb
1dx5_I_3761dx5   I378386PIPHEPHRCEETTEEEEEpxaabaabb
1e4m_M_4761e4m   M478486IDWNNVTDREETTEEEEEbxaabaaxb
1fcq_A_2691fcq   A269277KYQDRRDTDEETTEEEEEbxaabaaxx
1ncf_A_191ncf   A2129IHPQNNSICEETTEEEEExpaabaabb
1orv_A_4301orv   A434442IQLNDYTKVEETTEEEEEbxaabaaxb
1pdk_B_711pdk   B7179EEAALPGHLEETTEEEEExxaabpvbx
1rv1_A_671rv1   A6775YDEKQQHIVEETTEEEEExxaabaaxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dx5_I_3761dx5   I     FMTFORMIC ACID F - 376
1dx5_I_3761dx5   I     FMTFORMIC ACID C - 386
1e4m_M_4761e4m   M     NAGN-ACETYL-D-GLUCOSAMINE N - 482
1e4m_M_4761e4m   M     NAGN-ACETYL-D-GLUCOSAMINE T - 484
1e4m_M_4761e4m   M     NAGN-ACETYL-D-GLUCOSAMINE D - 485
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE Y - 67
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE Q - 71
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE Q - 72
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE H - 73
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE I - 74
1rv1_A_671rv1   A     IMZCIS-[4,5-BIS-(4-BROMOPHENYL)-2-(2-ETHOXY-4-METHOXYPHENYL)-4,5-DIHYDROIMIDAZOL-1-YL]-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]METHANONE V - 75

Clusters included in this Subclass
CLUSTER: HA.2.55