Information on SUBCLASS 2.2.33 |
Subclass Accession number: 6078
Subclass: 2.2.33 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 5.6 +/- 10.1 Average RMSD (Å) : 0.475 +/- 0.150 Consensus geometry
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Consensus Sequence: | XpXcXh |
(φψ)-conformation: | bbaabb |
Pattern: | [GIKV] | x | [ADNV] | [DKN] | x | x |
Conservation: | -0.891 | -0.127 | -0.509 | 1.949 | -0.067 | -0.356 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fo8_A_206 | 1fo8 | A | 210 | 215 | VEDDLE | EETTEE | bxaabb |
1h30_A_290 | 1h30 | A | 290 | 295 | KSVKSL | EETTEE | bbaabb |
1jyk_A_101 | 1jyk | A | 104 | 109 | IDADNY | EETTEE | bxaabb |
1ogq_A_80 | 1ogq | A | 85 | 90 | GINNLV | EETTEE | vbaaxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | V - 210 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | E - 211 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | D - 212 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | D - 213 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | L - 214 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | E - 215 |
1fo8_A_206 | 1fo8 | A | MMCMETHYL MERCURY ION | V - 216 |
1jyk_A_101 | 1jyk | A | MSESELENOMETHIONINE | Y - 102 |
1jyk_A_101 | 1jyk | A | MSESELENOMETHIONINE | L - 110 |
1ogq_A_80 | 1ogq | A | ACTACETATE ION | G - 85 |
1ogq_A_80 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | I - 86 |
1ogq_A_80 | 1ogq | A | ACTACETATE ION | I - 86 |
1ogq_A_80 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 87 |
1ogq_A_80 | 1ogq | A | ACTACETATE ION | N - 87 |
1ogq_A_80 | 1ogq | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 88 |
1ogq_A_80 | 1ogq | A | ACTACETATE ION | N - 88 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ogq_A_80 | 1ogq | A | AC5ACT BINDING SITE FOR CHAIN A | G - 85 |
1ogq_A_80 | 1ogq | A | AC5ACT BINDING SITE FOR CHAIN A | I - 86 |
1ogq_A_80 | 1ogq | A | AC2NAG BINDING SITE FOR CHAIN A | N - 87 |
Clusters included in this Subclass |
CLUSTER: HA.1.78 |