Information on SUBCLASS 2.2.38 |
Subclass Accession number: 6083
Subclass: 2.2.38 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 3 Average sequence ID (%) : 7.4 +/- 9.9 Average RMSD (Å) : 0.767 +/- 0.289 Consensus geometry
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Consensus Sequence: | XXXpXp |
(φψ)-conformation: | bbaaba |
Pattern: | [AIY] | x | x | x | [NRY] | x | [DT] | [FGM] | x |
Conservation: | -0.275 | -0.706 | 0.397 | -0.706 | 0.156 | -0.563 | 2.261 | -0.563 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1abr_B_229 | 1abr | B | 229 | 237 | IYSLYDDMV | EEETTTTEE | bxbaaxabb |
1cwd_L_69 | 1cwd | L | 70 | 77 | YISPRITF. | EEETTEEE. | babaabbb. |
1mda_H_269 | 1mda | H | 270 | 278 | AKLKNTDGI | EEETTTTEE | bbxaababb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | Y - 230 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | S - 231 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | L - 232 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | Y - 233 |
Clusters included in this Subclass |
CLUSTER: HA.3.289 |