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Information on SUBCLASS 2.2.39
Subclass Accession number: 6084
Subclass: 2.2.39 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 21.4 +/- 25.7
Average RMSD (Å) : 0.533 +/- 0.153

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hGpppX
(φψ)-conformation: bbaabb
Pattern: [FL][DH][FL][G][RST][KQR][HNS]x[GSV][VW][AEQ][IV]xx
Conservation:0.1160.7560.1162.477-0.5840.218-0.001-0.794-1.1670.638-0.4380.851-1.385-0.802
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1nu0_A_81nu0   A821FDFGTKSIGVAVGQEE--SSEEEEEEEEbbxbaabbxbbbbb
1vh5_A_971vh5   A105118LHLGSRHQVWQIEIEEE-SSEEEEEEEEabbxaabbbbbbbb
1vh9_A_971vh9   A105118LHLGRQNQSWEIVVEEE-SSEEEEEEEEabbbaabbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nu0_A_81nu0   A     MSESELENOMETHIONINE F - 8
1nu0_A_81nu0   A     MSESELENOMETHIONINE V - 17
1nu0_A_81nu0   A     MSESELENOMETHIONINE A - 18
1nu0_A_81nu0   A     MSESELENOMETHIONINE V - 19
1nu0_A_81nu0   A     MSESELENOMETHIONINE G - 20
1nu0_A_81nu0   A     MSESELENOMETHIONINE Q - 21

Clusters included in this Subclass
CLUSTER: HA.3.217