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Information on SUBCLASS 2.3.6
Subclass Accession number: 6107
Subclass: 2.3.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 29

Average sequence ID (%) : 15.1 +/- 15.3
Average RMSD (Å) : 0.559 +/- 0.204

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pXGXXX
(φψ)-conformation: bbeabb
Pattern: xxxx[chknqrstwy]x[adgns][adegnqrst]xx[afilmvy]x
Conservation:-0.187-0.694-0.288-0.516-0.287-0.3692.956-0.026-0.186-0.5020.714-0.616
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ass_*_1301ass   -135146VEERKIGDDRMTEEEEEETTEEEEbbxbbxeaxbbb
1b0u_A_71b0u   A1122DLHKRYGGHEVLEEEEEETTEEEElxbbbbeaxxab
1cd0_A_841cd0   A8798YCQSYDARNVVFEEEEEETTEEEEbxbbbbeaxxbb
1dj0_A_1751dj0   A181192INVTRHGPYVVVEEEEEETTEEEEbbbbxbeaxbbb
1dpj_A_781dpj   A8697QDTLSIGDLTIPEEEEEETTEEEEbbxbbbeaxbbx
1ek0_A_421ek0   A4657TQRVTINEHTVKEEEEEETTEEEEbbbbxbeaxbbb
1f2q_A_1471f2q   A150161YCTGKVWQLDYEEEEEEETTEEEEbbbbxbeabbbb
1fnl_A_1501fnl   A153164FCRGLVGSKNVSEEEEEETTEEEEbbbbbbeaxxbb
1i58_A_4301i58   A434445LSARHEGNNVVIEEEEEETTEEEEbbbbxbeabbbb
1kk1_A_3891kk1   A391402AISRQIGSRWRLEEEEEETTEEEExbbbxbeabxbx
1knx_A_1731knx   A180191IEIYRLGNRLFGEEEEEETTEEEEbbbbxbeabbbb
1kqw_A_811kqw   A8495TLVKWDGDKLVCEEEEEETTEEEEbbbbxbeabxbb
1mkm_A_961mkm   A97108HLILKDGFEGVYEEEEE-SSEEEEbbbxxbeabbbx
1oa2_A_1421oa2   A146157LYYGYNGAMQVYEEEEEETTEEEExbbbbbeaxxbb
1olr_A_1461olr   A150161LWTGYNGNMRVYEEEEEETTEEEExbbbbbeaxxbb
1oxd_A_1051oxd   A110121AEVKFEGDTLVNEEEEEETTEEEEbbbbxbeaxxbb
1pn2_A_891pn2   A98109IATTPKGTNVVIEEEEEETTEEEEabbbxbeabbbb
1qdm_A_831qdm   A91102EDSVTVGDLVVKEEEEEETTEEEEbbbxbbeabbxx
1qhv_A_4191qhv   A423434LVLTKCGSQVLAEEEEEETTEEEEbbbbxbeabbxb
1r2q_A_551r2q   A5970TQTVCLDDTTVKEEEEEETTEEEEbbbbxbeabxbx
1ryb_A_461ryb   A4859LGIGSIGEVPVLEEEEEETTEEEEbbbbbbeaxwbb
1tgj_*_831tgj   -8798TILYYVGRTPKVEEEEEETTEEEExbbbbbeabxbb
1tig_*_1481tig   -152163TAPKMDGRNMFLEEEEEETTEEEEbxpbxbeabbbb
1ucr_A_521ucr   A5263LEYWSSGSTTMYEEEEEETTEEEEbbbbxbeabbbb
1usp_A_781usp   A8394VGLQKAGLAFALEEEEEETTEEEEbbxbxbeaxbbx
2fcb_A_1522fcb   A155166HCTGNIGYTLYSEEEEEETTEEEEbbbbbbeabxbb
2por_*_2262por   -235246SVDSTFGATTVGEEEEEETTEEEEbbbbbbeabbbb
2sli_*_4672sli   -471482YDYNFSGNNLIEEEEEEETTEEEExbbbxbeaxxxb
3cms_*_783cms   -8697YDTVTVSNIVDIEEEEEETTEEEEbbxbbbeaxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 16
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 19
1b0u_A_71b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 21
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE I - 84
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE Q - 86
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 86
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE P - 97
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE K - 98
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE Q - 99
1dpj_A_781dpj   A     MANALPHA-D-MANNOSE D - 100
1dpj_A_781dpj   A     NAGN-ACETYL-D-GLUCOSAMINE D - 100
1ek0_A_421ek0   A     NINICKEL (II) ION I - 51
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE I - 51
1ek0_A_421ek0   A     NINICKEL (II) ION N - 52
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 52
1ek0_A_421ek0   A     NINICKEL (II) ION E - 53
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE E - 53
1ek0_A_421ek0   A     NINICKEL (II) ION H - 54
1ek0_A_421ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE H - 54
1ek0_A_421ek0   A     MHOS-OXYMETHIONINE W - 61
1ek0_A_421ek0   A     MGMAGNESIUM ION D - 62
1ek0_A_421ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 62
1ek0_A_421ek0   A     MGMAGNESIUM ION T - 63
1ek0_A_421ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 63
1f2q_A_1471f2q   A     NAGN-ACETYL-D-GLUCOSAMINE T - 148
1i58_A_4301i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER D - 449
1mkm_A_961mkm   A     ZNZINC ION Y - 108
1oa2_A_1421oa2   A     NAGN-ACETYL-D-GLUCOSAMINE V - 160
1oa2_A_1421oa2   A     NAGN-ACETYL-D-GLUCOSAMINE A - 161
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE A - 110
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE V - 112
1oxd_A_1051oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE N - 121
1r2q_A_551r2q   A     MGMAGNESIUM ION D - 75
1r2q_A_551r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 75
1r2q_A_551r2q   A     MGMAGNESIUM ION T - 76
1r2q_A_551r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 76
1tgj_*_831tgj   *     DIO1,4-DIETHYLENE DIOXIDE I - 88
1tgj_*_831tgj   *     DIO1,4-DIETHYLENE DIOXIDE Y - 90
1tgj_*_831tgj   *     DIO1,4-DIETHYLENE DIOXIDE E - 99
1tgj_*_831tgj   *     DIO1,4-DIETHYLENE DIOXIDE L - 101
1usp_A_781usp   A     MSESELENOMETHIONINE I - 79
1usp_A_781usp   A     MSESELENOMETHIONINE L - 85
1usp_A_781usp   A     GOLGLYCEROL K - 87
1usp_A_781usp   A     GOLGLYCEROL F - 92
1usp_A_781usp   A     MSESELENOMETHIONINE L - 98
1usp_A_781usp   A     MSESELENOMETHIONINE E - 99
1usp_A_781usp   A     MSESELENOMETHIONINE G - 100
1usp_A_781usp   A     MSESELENOMETHIONINE H - 101
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL H - 229
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Y - 232
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL G - 233
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 234
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 249
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL Q - 250
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL V - 251
2por_*_2262por   *     OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL L - 252
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oa2_A_1421oa2   A AC1NAG BINDING SITE FOR CHAIN AA - 161

Clusters included in this Subclass
CLUSTER: HA.1.25
CLUSTER: HA.3.29