ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.3.2

Subclass Accession number: 6174
Subclass: 3.3.2

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 21.0 +/- 25.0
Average RMSD (Å) : 0.322 +/- 0.044

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	ppXhXGX
(φψ)-conformation:	bbaaaep

Pattern:	x	[DHNRST]	[ADPT]	x	[fhkmr]	[AG]	[lpy]
Conservation:	-0.243	-0.012	0.377	-0.786	-0.551	2.046	-0.832

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a15_A_23	1a15	A	30	36	NTPACAL	EETTTEE	bbaaaex
1e3m_A_464	1e3m	A	467	473	FNAVHGY	EETTTEE	bbaaaex
1ewq_A_439	1ewq	A	442	448	YNAVFGY	EETTTEE	bbaaaex
1k3t_A_51	1k3t	A	52	58	YDTVHGK	EETTTEE	bbaaaex
1lfw_A_321	1lfw	A	321	327	HDDLMGD	EETTTEE	bbaaaex
1n6a_A_309	1n6a	A	309	315	VHPRFGP	EETTTEE	xxaaaex
1n7m_L_34	1n7m	L	39	45	QRPGRGL	EETTTEE	bbaaaex
1qg7_A_23	1qg7	A	30	36	NTPNCAL	EETTTEE	bbaaaex
43c9_B_33	43c9	B	39	45	QSPGKGL	EETTTEE	bbaaaex

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ewq_A_439	1ewq	A	MSESELENOMETHIONINE	V - 440
1ewq_A_439	1ewq	A	MSESELENOMETHIONINE	G - 441
1ewq_A_439	1ewq	A	MSESELENOMETHIONINE	Y - 448
1ewq_A_439	1ewq	A	MSESELENOMETHIONINE	Y - 449
1ewq_A_439	1ewq	A	MSESELENOMETHIONINE	L - 450
1n6a_A_309	1n6a	A	MSESELENOMETHIONINE	V - 309
1n6a_A_309	1n6a	A	MSESELENOMETHIONINE	P - 311
1n6a_A_309	1n6a	A	MSESELENOMETHIONINE	R - 312
1n7m_L_34	1n7m	L	MMPN-METHYLMESOPORPHYRIN	H - 35

Clusters included in this Subclass

CLUSTER: HA.2.80

CLUSTER: HA.4.82