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Information on SUBCLASS 3.5.1
Subclass Accession number: 6185
Subclass: 3.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 43

Average sequence ID (%) : 12.4 +/- 14.4
Average RMSD (Å) : 0.602 +/- 0.316

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcXpXh
(φψ)-conformation: bbeaabb
Pattern: xxxxx[degs][deknprst][cdehknqrsty]x[acfgilmtv]xx
Conservation:-1.0000.389-0.845-0.680-0.5022.7390.1090.335-0.698-0.424-0.347-0.077
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bag_*_3611bag   -362373FMNQRGSHGVVLEEEEETTTEEEEbbbbxeaabbbb
1bd2_D_861bd2   D90101CAAMEGAQKLVFEEEESSTT-EEExbbbbeaabbbx
1d6a_A_731d6a   A7687YSDPFETNKCRYEEEEETTTEEEEbbbwbeaaxbxb
1efu_B_1411efu   B143154GSYQHGARIGVLEEEEETTTEEEEbbbbxeaabbbb
1eg7_A_10331eg7   A10331043.VELYGKYKAKI.EEESSSS-EEE.bbxbeaabbbb
1em2_A_3141em2   A319330ILQRVEDNTLISEEEEETTTEEEExabbbeaabbbb
1f3d_H_341f3d   H3647WVKQSHGKSLEWEEEEETTTEEEEbbbbxeaaxbbx
1ftp_A_811ftp   A8596TITQDGPNKLVHEEEE-SSSEEEEbbbxbeaabbbb
1g0u_1_341g0u   13444.LIPVGDNTVVG.EEE-TTSEEEE.bbwbeaNbbbx
1g0u_F_681g0u   F6877..QVVDRHIGCV..EEETTTEEEE..bbbeaabbbb
1gp0_A_15381gp0   A15381549FTAAYSEKGLVYEEEEETTTEEEEbbbxbeaaxbbx
1gxy_A_1961gxy   A200211KVRTQGYNEIFLEEEEETTTEEEEbbbxbeaabbbb
1h3f_A_4161h3f   A416427RILQRGKDRFVREEEEETTTEEEEbbbbbeaabbbb
1hx0_A_4161hx0   A417428VAFGRGNRGFIVEEEEETTTEEEEbbbbbeaabbbb
1i31_A_2871i31   A292303LVREVGRTKLEVEEEEETTTEEEEbbbxbeaabbxb
1iar_B_521iar   B5261..ENNGGAGCVC..EESSSSEEEE..bxbeaabbbb
1iqd_A_861iqd   A8899YCQKYGTSAITFEEEE--SS--EEbbbbbeaabbbb
1jae_*_3921jae   -393404IAFSRGSQGFVAEEEEETTTEEEEbbbbbeaabbbb
1jj2_A_1261jj2   A127138QLLTHDRNVAVVEEEE--SS-EEEbxabbeaabbxb
1k3b_A_571k3b   A5970HFTIIYNQGFEIEEEEETTTEEEEbbbxbeaabbbb
1ky8_A_3681ky8   A368374...RLGPTYV.....EEETTEE.....xaeaabb..
1kyq_A_1521kyq   A152163ANLEIGDRLQILEEEEETTTEEEExbbbbeaabbbb
1l2h_A_171l2h   A1728SLVMSGPYELKAEEEESSSS-EEExbbpbeaabbbb
1ldn_A_1851ldn   A189200IIGEHGDTELPVEEB-SSTT-EEEbbepxeaapbxx
1lfo_*_841lfo   -8493..KMEGDNKMVT..EEETTTEEEE..bxxeaabbbb
1lld_A_1761lld   A176186IAGEHGDSEVP.EEBSSSTT-EE.bbexxeaapbx.
1m4k_A_361m4k   A3849LLHREGKYKDTLEEEE-STT-EEEbxbbxeaapbbb
1m5q_1_1051m5q   1105115.VVLIGDKVRVS.EEEETTTEEEE.bbbbeaabbbb
1m6i_A_4811m6i   A482493FWSDLGPDVGYEEEEESSTT-EEEbbbbbeaabbbb
1nnj_A_581nnj   A5970LIFEIGDDFRLIEEEEETTTEEEExbxbbeaabbxx
1o6z_A_1911o6z   A191201ILGEHGDAQVP.EEE-SSTTEEE.bbexxeaaxbx.
1ohw_A_4371ohw   A437445..GGCGDKSIR...EEETTTEEE...bbbeaabbb.
1pi1_A_661pi1   A6674..MSAGPRYEY...EESSTT-EE...xbbeaabbb.
1puj_A_1611puj   A161170..VKVGKELELL..EEETTTEEEE..xxbeaabbbb
1pze_A_1911pze   A191201VIGTHGDCMVP.EEB-SSTT-EE.bbebxeaapbx.
1qh5_A_21qh5   A415EVLPALTDNYMYEEEEETTTEEEEbxbwbeaaxbbb
1qup_A_1001qup   A105116RIVQVGENKTLFEEEE-SSS-EEEbbbxbeaabbbb
1rif_A_31rif   A415KVHFHDFSHVRIEEEEETTTEEEEbbbxbMaabbbb
1t2d_A_1771t2d   A177187IVGAHGNKMVL.EEB-SSTT-EE.bbGbxeaapxx.
1ygs_*_3871ygs   -388399QLECKGEGDVWVEEEEETTTEEEEbbbbbeaaxbbb
2kin_A_312kin   A3141.PKFKGEETVVI.EEEETTTEEEE.xbxbeaabbbb
2ncd_A_3692ncd   A369380TWTYHDESTVELEEEEETTTEEEExbbbxeaabbbb
9ldt_A_1919ldt   A191201ILGEHGDSSVP.EEB-SSTT-EE.bbexxeaaxbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d6a_A_731d6a   A     GUNGUANINE V - 73
1d6a_A_731d6a   A     GUNGUANINE M - 74
1d6a_A_731d6a   A     GUNGUANINE G - 75
1em2_A_3141em2   A     MSESELENOMETHIONINE V - 314
1f3d_H_341f3d   H     TPM2-(4-AMINOBENZYLAMINO)-3,4,5,6-TETRAHYDROPYRIDINIUM H - 35
1f3d_H_341f3d   H     TPM2-(4-AMINOBENZYLAMINO)-3,4,5,6-TETRAHYDROPYRIDINIUM W - 36
1f3d_H_341f3d   H     TPM2-(4-AMINOBENZYLAMINO)-3,4,5,6-TETRAHYDROPYRIDINIUM V - 37
1f3d_H_341f3d   H     TPM2-(4-AMINOBENZYLAMINO)-3,4,5,6-TETRAHYDROPYRIDINIUM W - 47
1k3b_A_571k3b   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 64
1k3b_A_571k3b   A     NAGN-ACETYL-D-GLUCOSAMINE N - 65
1kyq_A_1521kyq   A     MSESELENOMETHIONINE D - 158
1kyq_A_1521kyq   A     MSESELENOMETHIONINE R - 159
1ldn_A_1851ldn   A     FBPFRUCTOSE-1,6-DIPHOSPHATE V - 185
1ldn_A_1851ldn   A     FBPFRUCTOSE-1,6-DIPHOSPHATE H - 186
1ldn_A_1851ldn   A     FBPFRUCTOSE-1,6-DIPHOSPHATE A - 187
1ldn_A_1851ldn   A     FBPFRUCTOSE-1,6-DIPHOSPHATE Y - 188
1ldn_A_1851ldn   A     OXMOXAMIC ACID H - 193
1ldn_A_1851ldn   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 193
1lfo_*_841lfo   *     OLAOLEIC ACID M - 91
1lfo_*_841lfo   *     OLAOLEIC ACID T - 93
1lfo_*_841lfo   *     OLAOLEIC ACID F - 95
1lld_A_1761lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 180
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 105
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 106
1m5q_1_1051m5q   1     MSESELENOMETHIONINE L - 107
1m5q_1_1051m5q   1     MSESELENOMETHIONINE I - 108
1m5q_1_1051m5q   1     MSESELENOMETHIONINE G - 109
1m5q_1_1051m5q   1     MSESELENOMETHIONINE D - 110
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 114
1m5q_1_1051m5q   1     MSESELENOMETHIONINE S - 115
1m6i_A_4811m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 481
1m6i_A_4811m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 482
1m6i_A_4811m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 483
1m6i_A_4811m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 484
1m6i_A_4811m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 485
1nnj_A_581nnj   A     CRYPROPANE-1,2,3-TRIOL Y - 58
1nnj_A_581nnj   A     CRYPROPANE-1,2,3-TRIOL H - 72
1o6z_A_1911o6z   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 195
1ohw_A_4371ohw   A     VIG4-AMINO HEXANOIC ACID R - 445
1puj_A_1611puj   A     MGMAGNESIUM ION D - 171
1puj_A_1611puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 171
1qh5_A_21qh5   A     ZNZINC ION N - 12
1qh5_A_21qh5   A     GTTGLUTATHIONE N - 12
1rif_A_31rif   A     AUGOLD ION I - 3
1t2d_A_1771t2d   A     GOLGLYCEROL I - 177
1t2d_A_1771t2d   A     OXLOXALATE ION H - 181
1t2d_A_1771t2d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 181
1t2d_A_1771t2d   A     OXLOXALATE ION M - 185
9ldt_A_1919ldt   A     OXMOXAMIC ACID H - 195

Clusters included in this Subclass
CLUSTER: HA.2.20
CLUSTER: HA.3.30
CLUSTER: HA.4.21
CLUSTER: HA.5.84
CLUSTER: HA.6.28