ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 3.10.1

Subclass Accession number: 6201
Subclass: 3.10.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 18

Average sequence ID (%) : 17.0 +/- 19.6
Average RMSD (Å) : 0.656 +/- 0.253

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	pXpcXXh
(φψ)-conformation:	bbpeabb

Pattern:	x	x	x	[deprs]	[ADEG]	[adgrs]	[hknqstwy]	[fhlvwy]	x	x	x
Conservation:	-0.612	-0.381	-0.984	-0.040	2.697	0.037	-0.491	0.797	-0.406	-0.283	-0.335

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a06_*_81	1a06	-	84	94	IYESGGHLYLI	EEE-SSEEEEE	bbbbeabbbxx
1aop_*_347	1aop	-	349	359	VKGIDDNWHLT	EE-STTEEEEE	bxxxeaxbbbx
1f42_A_152	1f42	A	156	166	ERVRGDNKEYE	EEEETTEEEEE	bbbbeaxbbbb
1ftp_A_40	1ftp	A	44	54	EILDGDKFKLT	EE-SSSEEEEE	bxbxeaxbbbb
1g0u_I_34	1g0u	I	34	44	IFHYGHVFLGI	EEESSSEEEEE	bbbbeabbbbb
1h1a_A_25	1h1a	A	29	39	NLESGGQYSVT	EE-STTEEEEE	bxbpeabbbbb
1ivy_A_21	1ivy	A	26	36	LKSSGSKHLHY	EE-STTEEEEE	bxbpeaxbxxb
1jwy_A_127	1jwy	A	127	137	YTYSGLFLVAV	EEE-SSEEEEE	bbxbeabbbbb
1lk2_A_186	1lk2	A	192	202	HSRPEDKVTLR	EE-SSSEEEEE	bxbxeabbxbb
1m4w_A_27	1m4w	A	30	40	TLHSGGSYSTS	EE-STTEEEEE	bxbxeabbbbb
1n7v_A_467	1n7v	A	468	478	GYPEAAYYVAG	EEEETTEEEEE	bbxbeabbxbb
1nrg_A_248	1nrg	A	248	258	HRGEEDWLYER	EE-STTEEEEE	bxbxeaxbbbx
1obf_O_302	1obf	O	302	311	.KVSGRLVKVS	.EEETTEEEEE	.bbbeaxbbbb
1pvx_A_25	1pvx	A	28	38	TNNSGGTYEIT	EE-STTEEEEE	bxbxeabbbbb
1xnb_*_15	1xnb	-	19	29	VNGSGGNYSVN	EE-STTEEEEE	bxxxeaxbbbb
1xnd_*_25	1xnd	-	28	38	TNGGGGSFTVN	EE-STTEEEEE	bxbxeaxbbbb
1xyo_A_25	1xyo	A	28	38	TNGPGGQFSVN	EE-STTEEEEE	bxbpeaxbbbb
1yna_*_25	1yna	-	28	38	TNLEGGTYEIS	EE-STTEEEEE	bxxxeabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h1a_A_25	1h1a	A	SSULFUR ATOM	R - 27
1h1a_A_25	1h1a	A	PCAPYROGLUTAMIC ACID	F - 28
1h1a_A_25	1h1a	A	CACALCIUM ION	F - 28
1h1a_A_25	1h1a	A	PCAPYROGLUTAMIC ACID	N - 29
1h1a_A_25	1h1a	A	SSULFUR ATOM	N - 29
1h1a_A_25	1h1a	A	CACALCIUM ION	N - 29
1h1a_A_25	1h1a	A	PCAPYROGLUTAMIC ACID	L - 30
1h1a_A_25	1h1a	A	CACALCIUM ION	L - 30
1h1a_A_25	1h1a	A	PCAPYROGLUTAMIC ACID	E - 31
1h1a_A_25	1h1a	A	CACALCIUM ION	E - 31
1h1a_A_25	1h1a	A	SSULFUR ATOM	S - 37
1h1a_A_25	1h1a	A	SSULFUR ATOM	T - 39
1jwy_A_127	1jwy	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 127
1jwy_A_127	1jwy	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 137
1lk2_A_186	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	H - 188
1lk2_A_186	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	W - 204
1lk2_A_186	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 206
1m4w_A_27	1m4w	A	ACTACETATE ION	S - 33
1m4w_A_27	1m4w	A	ACTACETATE ION	G - 34
1m4w_A_27	1m4w	A	ACTACETATE ION	G - 35
1m4w_A_27	1m4w	A	ACTACETATE ION	S - 36
1obf_O_302	1obf	O	CSWCYSTEINE-S-DIOXIDE	Y - 314
1yna_*_25	1yna	*	PCAPYROGLUTAMIC ACID	A - 25
1yna_*_25	1yna	*	PCAPYROGLUTAMIC ACID	T - 26

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h1a_A_25	1h1a	A	S1AS BINDING SITE FOR CHAIN A	T - 39

Clusters included in this Subclass

CLUSTER: HA.3.64

CLUSTER: HA.4.73

CLUSTER: HA.5.53