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Information on SUBCLASS 4.1.4
Subclass Accession number: 624
Subclass: 4.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 11.3 +/- 14.3
Average RMSD (Å) : 0.458 +/- 0.232

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hpXpppXh
(φψ)-conformation: bbaaalbb
Pattern: x[afily][cdhknsy]x[adegknqst][ehknqrst][ADEGKNQRST]x[acfilpvwy]x
Conservation:-1.2421.0860.961-1.363-0.0210.4411.586-0.465-0.280-0.703
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bfg_*_621bfg   -6574IKGVSANRYLEEETTTTEEEbbxaaavbbx
1dp4_A_3881dp4   A393402NYNGTSQELMEE-TTT--EEbbxaaavxbb
1dqg_A_81dqg   A817IYNEDHKRCVEEETTTTEEEbbbaaalbbx
1dzk_A_381dzk   A4352EFDDKESKVYEEETTTTEEEbxbaaalbbb
1e9g_A_351e9g   A3544YADKENNIFNEEETTTTEEExabaaalbbx
1ej8_A_1611ej8   A162171ESDLGKNLYSEEETTTTEEExabaaalbbb
1g0s_A_591g0s   A6473PFDPVRDEVVEEETTTTEEEwbbaaalbbb
1g0u_J_971g0u   J103112GYDKKKNKPEEEETTTTEEEbbxaaavbwb
1g72_A_3921g72   A392401SYDPESRTLYEEETTTTEEEbbbaaalbbb
1i31_A_3411i31   A343352KYKASENAIVEEEGGGTEEEbxbaaalbxb
1i7q_A_1731i7q   A183192VLDHQRGSAREEETTTTEEEbbbaaavbbb
1io1_A_2201io1   A221230KFDDTTGKYYEEETTTTEEExxbaaavxbb
1jdp_A_3831jdp   A389398DYFGKEGRFEEEETTTTEEEbbbaaavbbb
1jlx_A_2101jlx   A212221IKSNYMNKFWEEETTTTEEEbbxaaavbxx
1jlx_A_2551jlx   A258267LLNMQKTWFIEEETTTTEEEbxxaaalbxx
1jlx_A_61jlx   A918LKSNNHQKYLEEETTTTEEEbbbaaNlbxx
1kb0_A_3991kb0   A399408SFNPQTGLVYEEETTTTEEEbbbaaavbbx
1kv9_A_3871kv9   A387396SFNPGTGLVYEEETTTTEEEbbbaaavbbx
1m1h_A_1161m1h   A117126ITCKENKTEAEEETTTTEEEbbxaaavbbb
1mju_H_451mju   H5059NIYPGSSYTHEEETTTTEEEbbbaaavxbb
1n4k_A_2391n4k   A242251LFHAEQEKFLEEETTTTEEEbxxaaavbxx
1n4k_A_3891n4k   A390399LRHLCTNTWVEEEGGGTEEEbbxaaavbbp
1n67_A_3861n67   A386395QIDKTNNTYREEETTTTEEEbbbaaalbbb
1njk_A_971njk   A108117CIDLKTQKALEEETTTTEEEbbbaaavbxx
1orv_A_1281orv   A134142IYDLNKRQL.EEETTTTEE.bbxaaalbx.
1oxd_A_1491oxd   A153162TADKQKNGIKEEEGGGTEEEbxbaaalbbb
1pa1_A_6331pa1   A633642MIFEDTNLKLEEETTTTEEEbbbaaalbbb
1pj5_A_7771pj5   A778787AYGYTVAKPIEEETTTTEEEbxxaaalbxb
1qo3_C_1951qo3   C200209SYDNKKKDWAEEEGGGTEEEbxbaaNlbxb
1viu_A_471viu   A5261LYNTKKKTVVEEETTTTEEEbbbaaalbbb
2bbk_H_2722bbk   H273282AYHRALDRIYEEETTTTEEEbbxaaalbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE N - 395
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE G - 396
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE T - 397
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE S - 398
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 399
1dp4_A_3881dp4   A     NAGN-ACETYL-D-GLUCOSAMINE E - 400
1dzk_A_381dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE M - 39
1dzk_A_381dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE I - 42
1dzk_A_381dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE L - 53
1dzk_A_381dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 55
1e9g_A_351e9g   A     MNMANGANESE (II) ION E - 48
1e9g_A_351e9g   A     PO4PHOSPHATE ION E - 48
1ej8_A_1611ej8   A     CACALCIUM ION K - 167
1ej8_A_1611ej8   A     CACALCIUM ION N - 168
1ej8_A_1611ej8   A     CACALCIUM ION L - 169
1ej8_A_1611ej8   A     CACALCIUM ION Y - 170
1jlx_A_2551jlx   A     GALD-GALACTOSE M - 261
1jlx_A_2551jlx   A     GALD-GALACTOSE Q - 262
1jlx_A_2551jlx   A     GALD-GALACTOSE K - 263
1jlx_A_2551jlx   A     GALD-GALACTOSE T - 264
1jlx_A_2551jlx   A     NGAN-ACETYL-D-GALACTOSAMINE T - 264
1njk_A_971njk   A     MSESELENOMETHIONINE C - 108
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE N - 149
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE V - 150
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE F - 165
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE I - 167
1pa1_A_6331pa1   A     MGMAGNESIUM ION K - 641
1viu_A_471viu   A     MSESELENOMETHIONINE Y - 53
1viu_A_471viu   A     MSESELENOMETHIONINE N - 54
1viu_A_471viu   A     MSESELENOMETHIONINE T - 55
1viu_A_471viu   A     MSESELENOMETHIONINE K - 57
1viu_A_471viu   A     MSESELENOMETHIONINE K - 58
1viu_A_471viu   A     MSESELENOMETHIONINE T - 59
1viu_A_471viu   A     MSESELENOMETHIONINE V - 60
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e9g_A_351e9g   A ASAACTIVE SITE A.E - 48
1jlx_A_2551jlx   A S1CARBOHYDRATE BINDING SITE.M - 261
1jlx_A_2551jlx   A S1CARBOHYDRATE BINDING SITE.Q - 262

Clusters included in this Subclass
CLUSTER: HA.3.33
CLUSTER: HA.4.26
CLUSTER: HA.4.60
CLUSTER: HA.5.19