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Information on SUBCLASS 4.1.10
Subclass Accession number: 6245
Subclass: 4.1.10 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 13.3 +/- 20.3
Average RMSD (Å) : 0.809 +/- 0.308

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XpXpXXXh
(φψ)-conformation: bbaaalbb
Pattern: xx[CDHN]x[DEGKNQ]x[egknt]x[FHIVWY]x
Conservation:-1.311-0.1471.649-0.4060.683-0.1370.445-1.2931.229-0.713
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e9g_A_351e9g   A3544YADKENNIFNEEETTTTEEExabaaalbbx
1ej8_A_1611ej8   A162171ESDLGKNLYSEEETTTTEEExabaaalbbb
1fng_B_351fng   B3948RFDSDVGEFREEETTT-SEEbbbaaavbxb
1jlx_A_2551jlx   A258267LLNMQKTWFIEEETTTTEEEbxxaaalbxx
1lkd_A_2341lkd   A239248GRHTNDHMVSEEESSS--EEbbxaaalxxb
1muj_B_351muj   B3948RYDSDVGEHREEETTT-SEEbbbaaavbxb
1n4k_A_2391n4k   A242251LFHAEQEKFLEEETTTTEEEbxxaaavbxx
1oxd_A_1491oxd   A153162TADKQKNGIKEEEGGGTEEEbxbaaalbbb
1q1a_A_1361q1a   A141150CHCIGCGKVYEEETTT--EEbbxaaavpxb
1qo3_C_1951qo3   C200209SYDNKKKDWAEEEGGGTEEEbxbaaNlbxb
1uvq_B_351uvq   B3948RFDSDVGVYREEETTT-SEEbbbaaavbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e9g_A_351e9g   A     MNMANGANESE (II) ION E - 48
1e9g_A_351e9g   A     PO4PHOSPHATE ION E - 48
1ej8_A_1611ej8   A     CACALCIUM ION K - 167
1ej8_A_1611ej8   A     CACALCIUM ION N - 168
1ej8_A_1611ej8   A     CACALCIUM ION L - 169
1ej8_A_1611ej8   A     CACALCIUM ION Y - 170
1jlx_A_2551jlx   A     GALD-GALACTOSE M - 261
1jlx_A_2551jlx   A     GALD-GALACTOSE Q - 262
1jlx_A_2551jlx   A     GALD-GALACTOSE K - 263
1jlx_A_2551jlx   A     GALD-GALACTOSE T - 264
1jlx_A_2551jlx   A     NGAN-ACETYL-D-GALACTOSAMINE T - 264
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL T - 235
1lkd_A_2341lkd   A     P6GHEXAETHYLENE GLYCOL T - 235
1lkd_A_2341lkd   A     P6GHEXAETHYLENE GLYCOL S - 236
1lkd_A_2341lkd   A     FE2FE (II) ION H - 241
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL H - 241
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL T - 242
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL N - 243
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL D - 244
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL M - 246
1lkd_A_2341lkd   A     FE2FE (II) ION Y - 250
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL Y - 250
1lkd_A_2341lkd   A     P6GHEXAETHYLENE GLYCOL Y - 250
1lkd_A_2341lkd   A     BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL S - 252
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE N - 149
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE V - 150
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE F - 165
1oxd_A_1491oxd   A     NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE I - 167
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 143
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS I - 144
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 145
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 146
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 147
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS K - 148
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e9g_A_351e9g   A ASAACTIVE SITE A.E - 48
1jlx_A_2551jlx   A S1CARBOHYDRATE BINDING SITE.M - 261
1jlx_A_2551jlx   A S1CARBOHYDRATE BINDING SITE.Q - 262
1uvq_B_351uvq   B AC8ACY BINDING SITE FOR CHAIN BE - 35

Clusters included in this Subclass
CLUSTER: HA.5.55