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Information on SUBCLASS 4.1.5
Subclass Accession number: 625
Subclass: 4.1.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 10.2 +/- 12.9
Average RMSD (Å) : 0.468 +/- 0.246

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXXchX
(φψ)-conformation: bbaaalbb
Pattern: xxxx[adekrst]x[DGKNQRS][cfilvwy]xx
Conservation:-0.763-0.455-0.2700.0650.215-0.7112.4490.818-0.610-0.738
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_2931a8d   -294303YTNGKLNIYYEEETTTTEEEbbbaaalbbb
1arb_*_1031arb   -107116ATYATSDFTLEEETTTTEEEbbbaaalbbb
1dvp_A_1941dvp   A196205CPLPKYGIEKEEEGGGTEEEbxbaaavbax
1dy9_A_751dy9   A7584YTNVDQDLVGEEETTTTEEEbbbaaavbbb
1ewq_A_1431ewq   A147156FLDVSTGEFKEEETTTTEEEbbbaaavpbb
1f0i_A_5051f0i   A505512.VDYARGIC..EEGGGTEE..bbaaavxb.
1h8d_H_601h8d   H6067.LYPPWDKN..EEGGGTEE..bbaaalxb.
1i7q_B_1551i7q   B159168VRDDRRRVCGEEETTTTEEEbbbaaalbbb
1iby_A_601iby   A6271FSIDAFGVQEEEEGGGTEEEbbbaaalxbb
1ji1_A_5551ji1   A560569ITDDTNKIYSEEETTTTEEEbbbaaalbbb
1kl9_A_711kl9   A7483RVDKEKGYIDEEETTTTEEEbbbaaavxbb
1l3a_A_2001l3a   A207216VQNKLINLDEEEEGGGTEEEbbbaaalxbb
1lc0_A_1831lc0   A190199EERKEDQYMKEEEGGGTEEEbbbaaalbbb
1leh_A_141leh   A1827CQDEASGLKAEEETTTTEEEbbbaaavxbb
1m56_B_2171m56   B219228WTVPAFGVKQEEEGGGTEEEbbbaaavbbb
1mhn_A_971mhn   A100109AIWSEDGCIYEE-TTTS-EEbxxaaavbxb
1mwv_A_5981mwv   A598605.ADGFRNYL..EEGGGTEE..bbaaalbb.
1n0u_A_2091n0u   A211220FGSGLHGWAFEEETTTTEEEbbbaaagbbb
1nlq_A_481nlq   A5362VNTPKDSVQIEEEGGGTEEEbbbaaalxbb
1obd_A_2111obd   A221230GIDEKTNEIIEEETTTTEEEbbxaaalbxb
1st0_A_481st0   A5463RESARDKIIFEEETTTTEEEbbbaaavbbb
1tfr_*_1951tfr   -195203KGDKKDNVA.HEEGGGTEE.aebaaavxb.
1ux6_A_10891ux6   A10951104SHRPKTGFIREEETTTTEEEbbbaaavxbb
1v54_B_1611v54   B163172WAVPSLGLKTEEEGGGTEEExbbaaavbbb
1vfy_A_2061vfy   A208217IPLPDLGIYEEEEGGGTEEEbxbaaavbab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dvp_A_1941dvp   A     CITCITRIC ACID R - 208
1dvp_A_1941dvp   A     ZNZINC ION V - 209
1iby_A_601iby   A     CUCOPPER (II) ION E - 60
1iby_A_601iby   A     HEZHEXANE-1,6-DIOL E - 60
1iby_A_601iby   A     CUCOPPER (II) ION G - 61
1kl9_A_711kl9   A     ZNZINC ION K - 77
1kl9_A_711kl9   A     MSESELENOMETHIONINE I - 82
1kl9_A_711kl9   A     MSESELENOMETHIONINE D - 83
1kl9_A_711kl9   A     MSESELENOMETHIONINE L - 84
1kl9_A_711kl9   A     MSESELENOMETHIONINE S - 85
1m56_B_2171m56   B     CUCOPPER (II) ION H - 217
1m56_B_2171m56   B     CUCOPPER (II) ION S - 218
1m56_B_2171m56   B     MGMAGNESIUM ION S - 218
1m56_B_2171m56   B     MGMAGNESIUM ION D - 229
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 217
1obd_A_2111obd   A     MGMAGNESIUM ION K - 217
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 219
1obd_A_2111obd   A     MGMAGNESIUM ION E - 219
1obd_A_2111obd   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 232
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE R - 54
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE D - 59
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE I - 61
1st0_A_481st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE F - 63
1tfr_*_1951tfr   *     MGMAGNESIUM ION D - 200
1v54_B_1611v54   B     CUCOPPER (II) ION H - 161
1v54_B_1611v54   B     CUADINUCLEAR COPPER ION H - 161
1v54_B_1611v54   B     CUCOPPER (II) ION S - 162
1v54_B_1611v54   B     MGMAGNESIUM ION S - 162
1v54_B_1611v54   B     CUADINUCLEAR COPPER ION S - 162
1v54_B_1611v54   B     FMEN-FORMYLMETHIONINE V - 165
1v54_B_1611v54   B     FMEN-FORMYLMETHIONINE S - 167
1v54_B_1611v54   B     MGMAGNESIUM ION D - 173
1vfy_A_2061vfy   A     ZNZINC ION V - 221
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_2111obd   A AC2ATP BINDING SITE FOR CHAIN AE - 219
1vfy_A_2061vfy   A POSRKHHCR MOTIF ; PUTATIVE PI3P BINDING SITER - 220

Clusters included in this Subclass
CLUSTER: HA.3.31
CLUSTER: HA.5.151
CLUSTER: HA.5.21