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Information on SUBCLASS 4.1.6
Subclass Accession number: 626
Subclass: 4.1.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 13.7 +/- 14.2
Average RMSD (Å) : 0.662 +/- 0.213

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpXXpXpX
(φψ)-conformation: bbaaalbb
Pattern: x[acfilmtv][acflpvw]xx[dehq]xx[knrst]x[AEKNRST]xx
Conservation:-0.9730.230-0.553-0.061-0.8562.176-0.986-0.4770.7461.1810.925-1.063-0.288
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a06_*_341a06   -3446VILAEDKRTQKLVEEEEEETTT--EEbxxbbxaaavxxb
1c39_A_621c39   A6375GLVQIQKSNGKETEEEEEETTTTEEEabbbbxaaalxbb
1dp4_A_3761dp4   A377389SLWDMDPETGAFREEEEE-TTT--EEbbbbxxaaavxbb
1hs6_A_161hs6   A2335LRCSVDFTRRTLTEEEEEETTTTEEEbbbbxxaaalbbb
1inp_*_1961inp   -204216PFVSQDLHTRRWKEEEEE-TTT--EEababbxaaaUxxb
1ksi_A_2541ksi   A259271LASIYDLEKHKSREEEEEETTTTEEElxbbxxaaalbxb
1lcy_A_281lcy   A3244EILDRHPFLGREVEEEEEETTTTEEEbbbxxbaaalbbb
1mpg_A_441mpg   A4860VTAIPDIARHTLHEEEEEETTTTEEEbbbbxbaaalbxx
1nu0_A_141nu0   A1628GVAVGQRITGTAREEEEEETTTTEEExbbbbbaaavbbb
1nuy_A_11801nuy   A11821194NCFMLDPAIGEFIEEEEEETTTTEEEbbbbxxaaavbxb
1orv_A_3221orv   A326338DICDYDESTGRWIEEEEEETTTTEEEbbbbxbaaavxbb
1q41_A_701q41   A7082VYQAKLCDSGELVEEEEEETTT--EEbbbbbxaaavxxb
1rdq_E_561rdq   E5769VMLVKHKESGNHYEEEEEETTT--EEbbxbbxaaavxxb
1uj2_A_1071uj2   A108120QIPVYDFVSHSRKEEEEEETTTTEEEbbxbbbaaalbxx
1uu3_A_951uu3   A96108VVLARELATSREYEEEEEETTT--EEbbxbbxaaavxxb
1vjl_A_31vjl   A719KTLALDRVSNTPVEEEEE-TTT--EEabbbxpaaalbwb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Q - 66
1c39_A_621c39   A     MNMANGANESE (II) ION Q - 68
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE Q - 68
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE N - 71
1c39_A_621c39   A     MNMANGANESE (II) ION K - 73
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE K - 73
1c39_A_621c39   A     MNMANGANESE (II) ION T - 75
1c39_A_621c39   A     P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE T - 75
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE R - 79
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE N - 81
1c39_A_621c39   A     NAGN-ACETYL-D-GLUCOSAMINE E - 82
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION R - 31
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 33
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 35
1ksi_A_2541ksi   A     MNMANGANESE (II) ION Y - 275
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE L - 282
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE V - 284
1nu0_A_141nu0   A     MSESELENOMETHIONINE V - 17
1nu0_A_141nu0   A     MSESELENOMETHIONINE A - 18
1nu0_A_141nu0   A     MSESELENOMETHIONINE V - 19
1nu0_A_141nu0   A     MSESELENOMETHIONINE G - 20
1nu0_A_141nu0   A     MSESELENOMETHIONINE Q - 21
1nu0_A_141nu0   A     MSESELENOMETHIONINE R - 22
1nu0_A_141nu0   A     MSESELENOMETHIONINE G - 25
1nu0_A_141nu0   A     MSESELENOMETHIONINE T - 26
1nu0_A_141nu0   A     MSESELENOMETHIONINE A - 27
1nu0_A_141nu0   A     MSESELENOMETHIONINE L - 30
1orv_A_3221orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 322
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME V - 70
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME A - 83
1q41_A_701q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME K - 85
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE R - 56
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE R - 56
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE V - 57
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE V - 57
1rdq_E_561rdq   E     GOLGLYCEROL K - 63
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE A - 70
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE A - 70
1rdq_E_561rdq   E     PO4PHOSPHATE ION K - 72
1rdq_E_561rdq   E     MGMAGNESIUM ION K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE K - 72
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE K - 72
1rdq_E_561rdq   E     ADPADENOSINE-5'-DIPHOSPHATE L - 74
1rdq_E_561rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE L - 74
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE Y - 112
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE D - 113
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE F - 114
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE H - 117
1uj2_A_1071uj2   A     C5PCYTIDINE-5'-MONOPHOSPHATE S - 118
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE T - 95
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE V - 96
1uu3_A_951uu3   A     GOLGLYCEROL R - 106
1uu3_A_951uu3   A     GOLGLYCEROL E - 107
1uu3_A_951uu3   A     GOLGLYCEROL Y - 108
1uu3_A_951uu3   A     GOLGLYCEROL A - 109
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE A - 109
1uu3_A_951uu3   A     GOLGLYCEROL K - 111
1uu3_A_951uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE K - 111
1uu3_A_951uu3   A     GOLGLYCEROL I - 112
1uu3_A_951uu3   A     GOLGLYCEROL L - 113
1vjl_A_31vjl   A     MSESELENOMETHIONINE K - 3
1vjl_A_31vjl   A     MSESELENOMETHIONINE V - 6
1vjl_A_31vjl   A     MSESELENOMETHIONINE K - 7
1vjl_A_31vjl   A     MSESELENOMETHIONINE T - 8
1vjl_A_31vjl   A     MSESELENOMETHIONINE L - 9
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AA - 109
1uu3_A_951uu3   A AC1LY4 BINDING SITE FOR CHAIN AK - 111

Clusters included in this Subclass
CLUSTER: HA.3.71
CLUSTER: HA.4.52
CLUSTER: HA.5.31