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PDB code:

Information on SUBCLASS 4.1.7

Subclass Accession number: 627 Subclass: 4.1.7 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 15 Average sequence ID (%) : 9.1 +/- 12.1 Average RMSD (Å) : 0.387 +/- 0.200 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bjn_A_151	1bjn	A	151	158	.NETIDGIA.	.EETTTTEE.	.bxaaavbb.
1bk1_*_16	1bk1	-	18	27	TYDESAGTFS	EEEGGGTEEE	bbbaaavbbb
1cyx_*_172	1cyx	-	174	183	FFIPRLGSQI	EEEGGGTEEE	xbbaaalbbb
1ei1_A_202	1ei1	A	205	214	LRDKRDGKED	EEETTT--EE	bbxaaavxbb
1fm4_A_66	1fm4	A	73	82	EVDHTNFKYN	EEETTTTEEE	bbbaaalbbb
1izn_A_151	1izn	A	162	171	QFQPKNFWNG	EEEGGGTEEE	bbbaaalbbb
1ji1_A_555	1ji1	A	560	569	ITDDTNKIYS	EEETTTTEEE	bbbaaalbbb
1ji2_A_504	1ji2	A	509	518	HADKQANLYA	EEETTTTEEE	bbbaaalbbb
1l3a_A_200	1l3a	A	207	216	VQNKLINLDE	EEEGGGTEEE	bbbaaalxbb
1m56_B_217	1m56	B	219	228	WTVPAFGVKQ	EEEGGGTEEE	bbbaaavbbb
1n0u_A_209	1n0u	A	211	220	FGSGLHGWAF	EEETTTTEEE	bbbaaagbbb
1qd6_C_206	1qd6	C	213	222	QYNWNTGYGG	EE-TTT--EE	bbxaaavxbb
1su4_A_478	1su4	A	486	495	EFSRDRKSMS	EEETTTTEEE	pxbaaalbbb
1uwc_A_35	1uwc	A	41	50	IYNAQTDING	EEETTTTEEE	bbbaaalxbb
1ux2_A_27	1ux2	A	40	49	EVNEITNEVD	EEETTTTEEE	bbbaaalbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bjn_A_151	1bjn	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	N - 151
1bjn_A_151	1bjn	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	E - 152
1bjn_A_151	1bjn	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	T - 153
1cyx_*_172	1cyx	*	CUADINUCLEAR COPPER ION	H - 172
1cyx_*_172	1cyx	*	CUADINUCLEAR COPPER ION	S - 173
1fm4_A_66	1fm4	A	DHODEOXYCHOLIC ACID	V - 67
1fm4_A_66	1fm4	A	DHODEOXYCHOLIC ACID	D - 69
1fm4_A_66	1fm4	A	DHODEOXYCHOLIC ACID	Y - 81
1fm4_A_66	1fm4	A	DHODEOXYCHOLIC ACID	Y - 83
1fm4_A_66	1fm4	A	DHODEOXYCHOLIC ACID	V - 85
1m56_B_217	1m56	B	CUCOPPER (II) ION	H - 217
1m56_B_217	1m56	B	CUCOPPER (II) ION	S - 218
1m56_B_217	1m56	B	MGMAGNESIUM ION	S - 218
1m56_B_217	1m56	B	MGMAGNESIUM ION	D - 229
1ux2_A_27	1ux2	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	I - 36
1ux2_A_27	1ux2	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	W - 53

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uwc_A_35	1uwc	A	AC3NAG BINDING SITE FOR CHAIN B	N - 43
1ux2_A_27	1ux2	A	BC2EPE BINDING SITE FOR CHAIN E	W - 53

Clusters included in this Subclass

CLUSTER: HA.3.40

CLUSTER: HA.4.33

CLUSTER: HA.5.60

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