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PDB code:

Information on SUBCLASS 4.4.1

Subclass Accession number: 6277 Subclass: 4.4.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 58 Average sequence ID (%) : 23.8 +/- 26.7 Average RMSD (Å) : 0.666 +/- 0.342 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4k_A_192	1a4k	A	195	207	EVTHQGLSSPVTK	EEEETT-SS-EEE	bbbbaababpxbb
1bmg_*_77	1bmg	-	80	92	RVKHVTLEQPRIV	EEE-TT-SS-EEE	bbbbaababpxbb
1c3a_B_297	1c3a	B	299	311	IVSKTTDNQWLSM	EEEESSSS-EEEE	xbbxaababbbbb
1c5c_L_191	1c5c	L	195	207	EVTHQGLSSPVTK	EEE-TT-SS-EEE	bbbbaababxbbb
1ccz_A_73	1ccz	A	76	88	EMESPNITDTMKF	EEE-TT--S-EEE	bbbbaabaxxbbb
1cv8_*_135	1cv8	-	138	150	IIWNPWDNGFMTQ	EEE-TT-SS-EEE	xbbxaababbbbb
1e25_A_43	1e25	A	47	59	AVWGPDDLEPLLI	EEE-TT-SS-EEE	bbbxaaxabxxbb
1eje_A_113	1eje	A	113	124	WTSSRRVKPPRI.	EE--SSSSS-EE.	bbxxaabapxbx.
1fng_A_161	1fng	A	164	176	EVDHWGLEEPLRK	EEE-TT-SS-EEE	bbbbaaxabpbbx
1fng_B_171	1fng	B	174	186	QVEHPSLTDPVTV	EEE-TT-SS-EEE	bbbbaaxabpbbb
1fp5_A_416	1fp5	A	419	431	RVTHPHLPRALMR	EEE-SS-SS-EEE	bxbbaaxaxxxbb
1fv1_A_160	1fv1	A	164	176	RVEHWGLDEPLLK	EEE-TT-SS-EEE	bbbbaaxabxbbb
1fv1_B_170	1fv1	B	174	186	QVEHPSVTSPLTV	EEE-TT-SS-EEE	bbbbaababxxbb
1h7s_A_119	1h7s	A	123	134	STCHASAKVGTR.	EEE-TT-SS-EE.	bbbxaaxabxbb.
1hdm_B_165	1hdm	B	168	180	VVEHIGAPEPILR	EEE-TTSSS-EEE	bbbbaababxbbb
1i7z_A_191	1i7z	A	195	207	EVTHQGLSSPVTK	EEE-TTSSS-EEE	bbbbaababwbbb
1iak_A_161	1iak	A	164	176	KVEHWGLEEPVLK	EEE-TT-SS-EEE	xbbbaababpxbb
1iak_B_170	1iak	B	174	186	HVEHPSLTSPITV	EEE-TT-SS-EEE	bbbbaababpbbb
1j8h_E_88	1j8h	E	93	105	ASSSTGLPYGYTF	EEE-TTSSS--EE	bbbbaababbpbx
1jeh_A_258	1jeh	A	262	274	VVEDTKTNKQENL	EEEESSS--EEEE	bbbxaabaxbbbx
1jk8_A_161	1jk8	A	164	176	KVEHWGLDEPLLK	EEE-TTSSS-EEE	xbbbaababpbbb
1jk8_B_170	1jk8	B	174	186	HVEHPSLQNPIIV	EEE-TT-SS-EEE	bbbbaababxxbb
1juf_A_257	1juf	A	260	272	RVYHEGLPEPLTL	EEE-TT-SS-EEE	bbbbaaxabpxbb
1k5n_A_257	1k5n	A	260	272	HVQHEGLPKPLTL	EEE-TT-SS-EEE	bbbbaababpbbb
1k5n_B_78	1k5n	B	81	93	RVNHVTLSQPKIV	EEE-TT-SS-EEE	bbbbaababpbbb
1k8d_A_257	1k8d	A	260	272	HVNHEGLPEPLTL	EEE-TTSSS-EEE	bxbbaababpxbb
1kcu_L_191	1kcu	L	195	207	EATHKTSTSPVVK	EEE-TT-SS-EEE	bbbbaababpxbb
1kcv_L_191	1kcv	L	195	207	EATHKTSSSPVVK	EEE-TT-SS-EEE	bbbbaabaxxxbb
1kjv_A_257	1kjv	A	260	272	RVEHEGLPKPLSQ	EEE-TT-SS-EEE	bbbbaabwbpxbb
1kjv_B_78	1kjv	B	81	93	RVKHVTLKEPKTV	EEE-TT-SS-EEE	bbbbaababpbbb
1l6x_A_319	1l6x	A	322	334	KVSNKALPAPIEK	EEE-TTSSS-EEE	bbbbaababxxbb
1lk2_A_257	1lk2	A	260	272	HVYHQGLPEPLTL	EEE-TT-SS-EEE	bbbbaababpxbb
1lk2_B_78	1lk2	B	81	93	RVKHDSMAEPKTV	EEE-TTSSS-EEE	bbbbaababpbbb
1lk3_L_190	1lk3	L	194	206	EVVHKTSSSPVVK	EEE-TT-SS-EEE	bbbbaababxxbb
1lo0_L_196	1lo0	L	200	212	EATHKTSTSPIVK	EEE-TTSSS-EEE	bbbbaabaxpxbb
1m2o_A_628	1m2o	A	630	640	TSFSMEDDPQP..	EEE-SSS--EE..	bbbbaabxpbx..
1m6o_A_257	1m6o	A	260	272	HVQHEGLPKPLTL	EEE-TTSSS-EEE	bbbbaaxwbpxbb
1mhc_A_257	1mhc	A	260	272	YVHHEGLTEPLAL	EEE-TTSSS-EEE	bbbbaaxabpxbx
1mju_L_191	1mju	L	195	207	EATHKTSTSPIVK	EEE-TT-SS-EEE	bbbbaababxbbb
1muj_B_171	1muj	B	174	186	HVEHPSLKSPITV	EEE-TT-SS-EEE	bbbbaababpxbb
1n0x_L_191	1n0x	L	195	207	EVTHQGLRSPVTK	EEE-TT-SS-EEE	bbbbaababpxbb
1nez_A_257	1nez	A	260	272	HVYHEGLPEPLTL	EEE-TTSSS-EEE	bbbbaababpxbb
1orv_A_382	1orv	A	385	396	CHFQTDKSNCTF.	EEEETT-S-EEE.	bxbxaabaxbbx.
1p7k_A_191	1p7k	A	195	207	EATHKTSTSPIVK	EEEETT-SS-EEE	bbbbaababxxbb
1pxv_A_353	1pxv	A	357	369	IYWNPWDTELSIQ	EEE-TT-SS-EEE	bbbxaababxbbb
1q67_A_140	1q67	A	143	155	IILNRINPDNFSM	EEEESSSS-EEEE	bbbpaabapbbbb
1qo3_A_257	1qo3	A	260	272	HVEHEGLPEPLTL	EEE-TT-SS-EEE	bbbbaababpxbb
1s9v_A_161	1s9v	A	164	176	KVEHWGLDKPLLK	EEE-TT-SS-EEE	bbbbaababpxbb
1su4_A_128	1su4	A	128	139	KVYRADRKSVQR.	EEEBSS-SS-EE.	bbbbaaxabpbx.
1ub5_B_197	1ub5	B	200	212	EATHKTSTSPIVK	EEE-SS-SS-EEE	bbbxaababpxbb
1uch_*_179	1uch	-	181	193	YELDGRKPFPINH	EEE-TTSSS-EEE	bxbbaaxabpbxa
1ucy_E_198	1ucy	E	200	212	VMKSPYNNRWYQM	EEE-SSS--EEEE	bbxxaaxaxxbxa
1umr_C_297	1umr	C	299	311	LISRTFDNQWLSA	EEEESS-S-EEEE	xbbbaabaxbbbb
1uvq_A_164	1uvq	A	167	179	KVEHWGLDQPLLK	EEE-TTSSS-EEE	bbbbaababpxbb
1uvq_B_171	1uvq	B	174	186	HVEHPSLQSPITV	EEE-TT-SS-EEE	bbbbaababpxbb
2eif_A_45	2eif	A	49	61	VGIGIFEKVKKEF	EEEESSS--EEEE	bbbpaabxbxbbb
3fru_A_252	3fru	A	255	267	QVEHEGLAQPLTV	EEE-TTSSS-EEE	bbbbaababpbbb
3lkf_A_32	3lkf	A	40	52	FIKDKSYDKDTLV	EEEETTSSSEEEE	xbxbaababxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cv8_*_135	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	W - 143
1fng_A_161	1fng	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 166
1fng_A_161	1fng	A	NAGN-ACETYL-D-GLUCOSAMINE	H - 167
1fng_A_161	1fng	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 168
1fv1_B_170	1fv1	B	CRYPROPANE-1,2,3-TRIOL	P - 178
1fv1_B_170	1fv1	B	CRYPROPANE-1,2,3-TRIOL	S - 179
1fv1_B_170	1fv1	B	CRYPROPANE-1,2,3-TRIOL	V - 180
1h7s_A_119	1h7s	A	MSESELENOMETHIONINE	V - 120
1h7s_A_119	1h7s	A	MSESELENOMETHIONINE	T - 121
1h7s_A_119	1h7s	A	MSESELENOMETHIONINE	I - 122
1h7s_A_119	1h7s	A	MSESELENOMETHIONINE	R - 134
1iak_A_161	1iak	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 166
1l6x_A_319	1l6x	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 334
1p7k_A_191	1p7k	A	GOLGLYCEROL	P - 204
1p7k_A_191	1p7k	A	GOLGLYCEROL	I - 205
1p7k_A_191	1p7k	A	GOLGLYCEROL	V - 206
1p7k_A_191	1p7k	A	GOLGLYCEROL	K - 207
1uvq_A_164	1uvq	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 169
1uvq_A_164	1uvq	A	NAGN-ACETYL-D-GLUCOSAMINE	H - 170
1uvq_A_164	1uvq	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 171
3fru_A_252	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 252
3fru_A_252	3fru	A	MANALPHA-D-MANNOSE	Y - 252

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1cv8_*_135	1cv8	*	NULCATALYTIC TRIAD.	N - 141
1uch_*_179	1uch	*	CATACTIVE SITE RESIDUES.	D - 184
1uvq_A_164	1uvq	A	AC1ZN BINDING SITE FOR CHAIN B	D - 165
1uvq_A_164	1uvq	A	AC6NAG BINDING SITE FOR CHAIN A	E - 169
1uvq_A_164	1uvq	A	AC6NAG BINDING SITE FOR CHAIN A	W - 171
1uvq_A_164	1uvq	A	AC1ZN BINDING SITE FOR CHAIN B	H - 180

Clusters included in this Subclass

CLUSTER: HA.5.98

CLUSTER: HA.6.6

CLUSTER: HA.7.4

CLUSTER: HA.8.0

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