ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.1.8

Subclass Accession number: 628
Subclass: 4.1.8

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 11.7 +/- 13.1
Average RMSD (Å) : 0.492 +/- 0.173

Consensus geometry

d (Å): 3

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hXXXXXXX
(φψ)-conformation:	bbaaalbb

Pattern:	[ciltv]	x	x	[ivwy]	x	x	[adek]	[aeknrst]	[adegkqr]	[aekst]	[aiklv]	[hnqrsty]	x
Conservation:	1.802	-0.796	-1.081	0.333	-0.122	-1.501	0.813	0.675	-0.357	1.095	0.710	-0.342	-1.229

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1at0_*_330	1at0	-	331	343	VSVWQPESQKLTF	EEEEETTTTEEEE	bxbxbaaalbbbb
1czp_A_2	1czp	A	5	17	VTLINEAEGTKHE	EEEEETTTTEEEE	bbxbbaaavbbbb
1d2k_A_331	1d2k	A	331	343	QVTELEDIAASYS	EEEEETTTTEEEE	xxbbbaaalbbbb
1d8i_A_452	1d8i	A	459	471	VSYIHNDSCTRID	EEEEEGGGTEEEE	bbbbbaaalbbbb
1ebf_A_283	1ebf	A	288	300	IGKVDVATKSVSV	EEEEETTTTEEEE	bbbbbaaalbbbb
1epf_A_166	1epf	A	170	182	CEGRILARGEINF	EEEEEGGGTEEEE	xbbbbaaavxbbb
1g8k_B_104	1g8k	B	106	118	LLRYDAASDALTA	EEEEETTTTEEEE	xbbbbaaavxbbx
1h6l_A_128	1h6l	A	131	143	IYAIDGKNGTLQS	EEEEETTTTEEEE	bbxxbaaavbbbx
1jj2_S_59	1jj2	S	62	74	VINVDLDKAVIHV	EEEEETTTTEEEE	xabbbaaalbbbb
1jyo_A_81	1jyo	A	81	93	TLAYIDAAETLLL	EEEEEGGGTEEEE	bxbbbaaalbxbx
1lcy_A_82	1lcy	A	87	99	VTAVDPVADIATL	EEEEETTTTEEEE	xabbbaaalbbbb
1ni9_A_300	1ni9	A	305	317	TLLIRGKSRTIRR	EEEEETTTTEEEE	bxbbbaaalbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1at0_*_330	1at0	*	MSESELENOMETHIONINE	S - 332
1at0_*_330	1at0	*	MSESELENOMETHIONINE	L - 341
1at0_*_330	1at0	*	MSESELENOMETHIONINE	F - 343

Clusters included in this Subclass

CLUSTER: HA.4.38