Information on SUBCLASS 4.8.1 |
Subclass Accession number: 6286
Subclass: 4.8.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 14.5 +/- 17.0 Average RMSD (Å) : 0.736 +/- 0.287 Consensus geometry
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Consensus Sequence: | XpXpcXXX |
(φψ)-conformation: | bbaalabb |
Pattern: | x | x | x | [dgrst] | x | [adkns] | [dgkr] | x | x | x | x | x |
Conservation: | -0.337 | -0.481 | -0.791 | 1.003 | -0.815 | 1.726 | 2.055 | -0.481 | -0.494 | -0.586 | -0.496 | -0.303 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b9m_A_146 | 1b9m | A | 148 | 159 | DVLLADGKTRLK | EEEETTS--EEE | bbbxaavaxxbb |
1dcu_A_111 | 1dcu | A | 113 | 124 | VEESYSGNYIVV | EEEETTSS-EEE | bbbxaavabbbb |
1eej_A_35 | 1eej | A | 37 | 48 | LYITDDGKHIIQ | EEEETTS--EEE | bbbxaavabbbx |
1h9s_A_144 | 1h9s | A | 148 | 159 | DVLLADGKTRLK | EEEETTSS-EEE | xbxxaaUaxbbb |
1ijq_A_476 | 1ijq | A | 478 | 489 | SVADTKGVKRKT | EEEETTSSSEEE | bbbxaavabbbx |
1ijq_A_520 | 1ijq | A | 522 | 533 | KKGGLNGVDIYS | EEEETTS--EEE | bbbxaavaxbbx |
1n1t_A_435 | 1n1t | A | 435 | 446 | VWEDVYRCVDAN | EEEETTSS--EE | bbxxaavabxbx |
1qex_A_199 | 1qex | A | 205 | 216 | TCQSVDGRKIKT | EEEETTSS-EEE | bbbxaavabbbb |
1ri6_A_254 | 1ri6 | A | 258 | 269 | FSVSEDGSVLSK | EEE-TTS--EEE | bbbxaavabxbx |
1s18_A_55 | 1s18 | A | 64 | 75 | LTLSDSGDKVAV | EEEETTSS-EEE | bbbxaavabbbb |
1usp_A_18 | 1usp | A | 18 | 29 | TTRSSDDRLNLD | EEEETTSS-EEE | bbbxaavabbbx |
1uuz_A_67 | 1uuz | A | 71 | 82 | VAFRGDKSAAYG | EEEETTSS-EEE | bbxxaalabbbb |
1uyp_A_45 | 1uyp | A | 48 | 59 | HAVSDDLVHWRH | EEEESSSSS-EE | bbbbaavaxxbx |
1ypr_A_17 | 1ypr | A | 19 | 30 | VIYSRAGDAVWA | EEEETTS--EEE | bbxxaavabxab |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | H - 146 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | V - 147 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | D - 148 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | R - 157 |
1b9m_A_146 | 1b9m | A | NINICKEL (II) ION | K - 159 |
1h9s_A_144 | 1h9s | A | MOOMOLYBDATE ION | Q - 144 |
1h9s_A_144 | 1h9s | A | MOOMOLYBDATE ION | A - 161 |
1h9s_A_144 | 1h9s | A | MOOMOLYBDATE ION | I - 162 |
1h9s_A_144 | 1h9s | A | MOOMOLYBDATE ION | T - 163 |
1qex_A_199 | 1qex | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | I - 219 |
1qex_A_199 | 1qex | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | L - 222 |
1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | L - 59 |
1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | K - 61 |
1s18_A_55 | 1s18 | A | TMNTRIS(HYDROXYMETHYL)AMINOMETHANE | Y - 63 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | T - 18 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | L - 28 |
1usp_A_18 | 1usp | A | GOLGLYCEROL | D - 29 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1usp_A_18 | 1usp | A | AC2GOL BINDING SITE FOR CHAIN A | D - 29 |
Clusters included in this Subclass |
CLUSTER: HA.4.166 |
CLUSTER: HA.5.116 |
CLUSTER: HA.5.99 |
CLUSTER: HA.6.45 |