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Information on SUBCLASS 4.8.1
Subclass Accession number: 6286
Subclass: 4.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 14.5 +/- 17.0
Average RMSD (Å) : 0.736 +/- 0.287

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXpcXXX
(φψ)-conformation: bbaalabb
Pattern: xxx[dgrst]x[adkns][dgkr]xxxxx
Conservation:-0.337-0.481-0.7911.003-0.8151.7262.055-0.481-0.494-0.586-0.496-0.303
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9m_A_1461b9m   A148159DVLLADGKTRLKEEEETTS--EEEbbbxaavaxxbb
1dcu_A_1111dcu   A113124VEESYSGNYIVVEEEETTSS-EEEbbbxaavabbbb
1eej_A_351eej   A3748LYITDDGKHIIQEEEETTS--EEEbbbxaavabbbx
1h9s_A_1441h9s   A148159DVLLADGKTRLKEEEETTSS-EEExbxxaaUaxbbb
1ijq_A_4761ijq   A478489SVADTKGVKRKTEEEETTSSSEEEbbbxaavabbbx
1ijq_A_5201ijq   A522533KKGGLNGVDIYSEEEETTS--EEEbbbxaavaxbbx
1n1t_A_4351n1t   A435446VWEDVYRCVDANEEEETTSS--EEbbxxaavabxbx
1qex_A_1991qex   A205216TCQSVDGRKIKTEEEETTSS-EEEbbbxaavabbbb
1ri6_A_2541ri6   A258269FSVSEDGSVLSKEEE-TTS--EEEbbbxaavabxbx
1s18_A_551s18   A6475LTLSDSGDKVAVEEEETTSS-EEEbbbxaavabbbb
1usp_A_181usp   A1829TTRSSDDRLNLDEEEETTSS-EEEbbbxaavabbbx
1uuz_A_671uuz   A7182VAFRGDKSAAYGEEEETTSS-EEEbbxxaalabbbb
1uyp_A_451uyp   A4859HAVSDDLVHWRHEEEESSSSS-EEbbbbaavaxxbx
1ypr_A_171ypr   A1930VIYSRAGDAVWAEEEETTS--EEEbbxxaavabxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b9m_A_1461b9m   A     NINICKEL (II) ION H - 146
1b9m_A_1461b9m   A     NINICKEL (II) ION V - 147
1b9m_A_1461b9m   A     NINICKEL (II) ION D - 148
1b9m_A_1461b9m   A     NINICKEL (II) ION R - 157
1b9m_A_1461b9m   A     NINICKEL (II) ION K - 159
1h9s_A_1441h9s   A     MOOMOLYBDATE ION Q - 144
1h9s_A_1441h9s   A     MOOMOLYBDATE ION A - 161
1h9s_A_1441h9s   A     MOOMOLYBDATE ION I - 162
1h9s_A_1441h9s   A     MOOMOLYBDATE ION T - 163
1qex_A_1991qex   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID I - 219
1qex_A_1991qex   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID L - 222
1s18_A_551s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE L - 59
1s18_A_551s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE K - 61
1s18_A_551s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE Y - 63
1usp_A_181usp   A     GOLGLYCEROL T - 18
1usp_A_181usp   A     GOLGLYCEROL L - 28
1usp_A_181usp   A     GOLGLYCEROL D - 29
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1usp_A_181usp   A AC2GOL BINDING SITE FOR CHAIN AD - 29

Clusters included in this Subclass
CLUSTER: HA.4.166
CLUSTER: HA.5.116
CLUSTER: HA.5.99
CLUSTER: HA.6.45