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Information on SUBCLASS 4.1.9
Subclass Accession number: 629
Subclass: 4.1.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 9.2 +/- 12.5
Average RMSD (Å) : 0.483 +/- 0.180

Consensus geometry
d (Å): 3 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hpXpXXXX
(φψ)-conformation: bbaaalbb
Pattern: [afiltv][gikltv]x[cfgilv][dnrs]x[adeks]x[adgkqr]xx
Conservation:0.218-0.254-1.200-0.4462.641-0.4850.222-0.0610.531-0.474-0.692
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c9o_A_21c9o   A616VKWFNNEKGYGEEEEETTTTEExabbxaaavbb
1ggx_A_251ggx   A3242EGEGRPYEGHNEEEEETTTTEEbbbbbaaavbb
1grj_*_911grj   -92102VTVLNLDSDEEEEEEETTTTEEbxbbxaaavxb
1itv_A_1191itv   A120130LWRFDVKAQMVEEEEETTTTEEbbxbxaaalbb
1jj2_S_591jj2   S6272VINVDLDKAVIEEEEETTTTEExabbbaaalbb
1lcy_A_821lcy   A8797VTAVDPVADIAEEEEETTTTEExabbbaaalbb
1lml_*_5061lml   -512522NVQCDTATRTYEEEEETTTTEExbbbxaaalbb
1nyc_A_521nyc   A5565ILFIDTAHQRIEEEEETTTTEExabbxaaalbb
1oga_D_1591oga   D159169TVLDMRSMDFKEEEEEGGGTEEbbbbbaaalbb
1qft_A_471qft   A5363ANDVNEDEKSIEEEEETTTTEEbbvpbaaalbb
1r17_A_4331r17   A439449FTNIDTKNHTVEEEEETTTTEExabbbaaalbb
3lkf_A_163lkf   A2333ATADSDKFKISEEEEETTTTEEbbbbbaaalbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL W - 8
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL F - 9
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 10
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 11
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 12
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 13
1c9o_A_21c9o   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 15
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID N - 42
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID T - 43
1ggx_A_251ggx   A     CRQ[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID V - 44
1qft_A_471qft   A     HSMHISTAMINE V - 51
1qft_A_471qft   A     HSMHISTAMINE I - 63
1qft_A_471qft   A     HSMHISTAMINE A - 65
1qft_A_471qft   A     HSMHISTAMINE F - 67

Clusters included in this Subclass
CLUSTER: HA.3.47
CLUSTER: HA.5.32