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Information on SUBCLASS 4.1.10
Subclass Accession number: 630
Subclass: 4.1.10 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 11.3 +/- 13.4
Average RMSD (Å) : 0.912 +/- 0.327

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XcXppppX
(φψ)-conformation: bbaaalbb
Pattern: x[ltv]xxx[tvy][DEN]x[ENPQS][ADEKT]xxxxx[ilptv]xxx
Conservation:-0.2000.426-0.786-0.806-0.3030.5043.571-0.2450.8100.5180.181-0.116-0.658-0.300-0.9320.040-0.682-0.556-0.465
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cru_A_1121cru   A116134IRRYTYNKSTDTLEKPVDLEEEEEEETTTTEEEEEEEExbbbbxbaaalbbblwbxa
1dxr_H_1641dxr   H168186VTDLWVDRSEHYFRYLELSEEEEEEETTTTEEEEEEEExabbbbxaaavbxabbbbx
1i7q_A_351i7q   A3654LLLESAEINDKQNLQSLLVEEEEEE-TTT--EEEEEEEbbbbbbxaaavxxabbbbx
1jdp_A_3701jdp   A372390SVIAMTDVEAGTQEVIGDYEEEEEEETTTTEEEEEEEEbbxbxabaaavxbbxabbb
1ksi_A_2541ksi   A258276SLASIYDLEKHKSRRVLYKEEEEEEETTTTEEEEEEEEblxbbxxaaalbxbxabab
1oal_A_21oal   A321LTVKMTDLQTGKPVGTIELEEEEEEETTT--EEEEEEEbbbxbbxaaavxxaebbxb
1rzh_H_1601rzh   H164182VVDIWVDIPEQMARFLEVEEEEEEEETTTTEEEEEEEExabbxbxaaalbxabbxbx
1uca_A_1481uca   A148166GLRCRTDPQTKVSYLVQVVEEEEEE-TTT--EEEEEEEbbbbbxxaaavxxbxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cru_A_1121cru   A     GOLGLYCEROL D - 126
1ksi_A_2541ksi   A     MNMANGANESE (II) ION Y - 275
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE L - 282
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE V - 284

Clusters included in this Subclass
CLUSTER: HA.3.107
CLUSTER: HA.5.43