ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.16.1

Subclass Accession number: 6302
Subclass: 4.16.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 15.1 +/- 19.9
Average RMSD (Å) : 0.662 +/- 0.192

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXGXpXX
(φψ)-conformation:	bbpeapbb

Pattern:	x	[emry]	x	[efkl]	x	x	[GS]	[degnr]	[ANST]	x	[agikmv]	[aclvy]	x	[IWY]
Conservation:	-0.287	-0.293	-0.465	-0.713	-0.338	-0.387	3.110	-0.210	0.811	-0.551	-0.566	-0.218	-0.574	0.682

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1as4_A_237	1as4	A	240	253	VELKYTGNASALFI	EEEEBSSS-EEEEE	bbbxbxeabbbxbb
1bwv_S_126	1bwv	S	129	142	MRQEDKSRSIKYTI	EEEE-STT-EEEEE	bbxxFxeaxbbbbb
1fi4_A_297	1fi4	A	298	311	AYTFDAGPNAVLYY	EEEE-SSS-EEEEE	bbbbxxeaxbbbxb
1h4g_A_25	1h4g	A	27	40	TMILNHGGTFSAQW	EEEE-STT-EEEEE	bbbxbxeaxbbbbb
1hix_A_26	1hix	A	28	41	SMNLASGGSYGTSW	EEEE-STT-EEEEE	bbxxbpeaxbbbbb
1igo_A_25	1igo	A	27	40	SMTLNSGGAFSAQW	EEEE-STT-EEEEE	bbbxbpeaxbbbbb
1m93_B_183	1m93	B	186	199	IELPYVGDTSMVVI	EEEEBSSS-EEEEE	bbbxxpeabbbbbb
1n0w_A_301	1n0w	A	301	314	YLRKGRGETRICKI	EEEE-STTBEEEEE	bxbxbxeaxbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	V - 297
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	A - 298
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 299
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	T - 300
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	F - 301
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	D - 302
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	G - 304
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	P - 305
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 310
1fi4_A_297	1fi4	A	MSESELENOMETHIONINE	Y - 311
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	M - 28
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	I - 29
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	L - 30
1h4g_A_25	1h4g	A	PCAPYROGLUTAMIC ACID	N - 31
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	Y - 301
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	L - 302
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	R - 303
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	G - 305
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	R - 306
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	T - 309
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	R - 310
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	I - 311
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	I - 311
1n0w_A_301	1n0w	A	MSESELENOMETHIONINE	C - 312
1n0w_A_301	1n0w	A	EDO1,2-ETHANEDIOL	C - 312

Clusters included in this Subclass

CLUSTER: HA.6.37