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Information on SUBCLASS 4.21.1
Subclass Accession number: 6308
Subclass: 4.21.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 28.6 +/- 24.0
Average RMSD (Å) : 0.357 +/- 0.127

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pTDYppph
(φψ)-conformation: bbagaabb
Pattern: [AEGKNS][dkny][dekpt][FHLV][ltvw][IV][ilv][ADEKS][T][DN][Y][dekns][KNQRT][FHY][ALV][CILMV]x[cdhy]x[cekt]
Conservation:-0.563-0.738-0.894-0.546-0.8820.889-0.242-0.3301.6341.3052.626-0.639-0.3391.343-0.027-0.045-0.608-0.485-0.594-0.865
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1beb_A_891beb   A89108ENKVLVLDTDYKKYLLFCMEEEEEEEEEE-SSSEEEEEEEbabbbxabbagaabbbbbbb
1epa_A_831epa   A84103KKEVVVEATDYLTYAIIDITEEEEEEEEE-SSSEEEEEEEbbbbbxabbavaabbbbbbb
1i4u_A_1021i4u   A102121AAPLVILETDYSNYACLYSCEEEEEEEEE-SSSEEEEEEEbbwbbxabbagaabbbbbbb
1jyd_A_1001jyd   A101120NDDHWIVDTDYDTYAVQYSCEEEEEEEEE-SSSEEEEEEEbbxbbxabbagaabbbbbbb
1kt7_A_1001kt7   A101120NDDHWIIDTDYETFAVQYSCEEEEEEEEE-SSSEEEEEEEbbpbbxabbagaabbbbbbb
1l6m_A_1031l6m   A105124SYLVRVVSTNYNQHAMVFFKEEEEEEEEE-SSSEEEEEEEbbbbbxabbagaabbbbbbb
2a2u_A_872a2u   A87106GNTFTILKTDYDRYVMFHLIEEEEEEEEE-SSSEEEEEEExbbbbxabbagaabbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 102
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 103
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL P - 104
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL L - 105
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL L - 118
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL S - 120
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL I - 122
1jyd_A_1001jyd   A     GOLGLYCEROL D - 102
1jyd_A_1001jyd   A     GOLGLYCEROL D - 103
1jyd_A_1001jyd   A     GOLGLYCEROL H - 104
1jyd_A_1001jyd   A     GOLGLYCEROL W - 105
1jyd_A_1001jyd   A     GOLGLYCEROL Q - 117
1jyd_A_1001jyd   A     GOLGLYCEROL C - 120
1jyd_A_1001jyd   A     GOLGLYCEROL R - 121
1jyd_A_1001jyd   A     GOLGLYCEROL L - 123
1kt7_A_1001kt7   A     RTLRETINOL D - 102
1kt7_A_1001kt7   A     RTLRETINOL H - 104
1kt7_A_1001kt7   A     RTLRETINOL Q - 117
1kt7_A_1001kt7   A     RTLRETINOL R - 121
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID L - 103
1l6m_A_1031l6m   A     FEFE (III) ION Y - 106
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID Y - 106
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID Y - 106
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID F - 123
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID F - 123
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID K - 124
1l6m_A_1031l6m   A     FEFE (III) ION K - 125
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID K - 125
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID K - 125
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID S - 127

Clusters included in this Subclass
CLUSTER: HA.3.94