Information on SUBCLASS 4.21.1 |
Subclass Accession number: 6308
Subclass: 4.21.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 28.6 +/- 24.0 Average RMSD (Å) : 0.357 +/- 0.127 Consensus geometry
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Consensus Sequence: | pTDYppph |
(φψ)-conformation: | bbagaabb |
Pattern: | [AEGKNS] | [dkny] | [dekpt] | [FHLV] | [ltvw] | [IV] | [ilv] | [ADEKS] | [T] | [DN] | [Y] | [dekns] | [KNQRT] | [FHY] | [ALV] | [CILMV] | x | [cdhy] | x | [cekt] |
Conservation: | -0.563 | -0.738 | -0.894 | -0.546 | -0.882 | 0.889 | -0.242 | -0.330 | 1.634 | 1.305 | 2.626 | -0.639 | -0.339 | 1.343 | -0.027 | -0.045 | -0.608 | -0.485 | -0.594 | -0.865 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1beb_A_89 | 1beb | A | 89 | 108 | ENKVLVLDTDYKKYLLFCME | EEEEEEEEE-SSSEEEEEEE | babbbxabbagaabbbbbbb |
1epa_A_83 | 1epa | A | 84 | 103 | KKEVVVEATDYLTYAIIDIT | EEEEEEEEE-SSSEEEEEEE | bbbbbxabbavaabbbbbbb |
1i4u_A_102 | 1i4u | A | 102 | 121 | AAPLVILETDYSNYACLYSC | EEEEEEEEE-SSSEEEEEEE | bbwbbxabbagaabbbbbbb |
1jyd_A_100 | 1jyd | A | 101 | 120 | NDDHWIVDTDYDTYAVQYSC | EEEEEEEEE-SSSEEEEEEE | bbxbbxabbagaabbbbbbb |
1kt7_A_100 | 1kt7 | A | 101 | 120 | NDDHWIIDTDYETFAVQYSC | EEEEEEEEE-SSSEEEEEEE | bbpbbxabbagaabbbbbbb |
1l6m_A_103 | 1l6m | A | 105 | 124 | SYLVRVVSTNYNQHAMVFFK | EEEEEEEEE-SSSEEEEEEE | bbbbbxabbagaabbbbbbb |
2a2u_A_87 | 2a2u | A | 87 | 106 | GNTFTILKTDYDRYVMFHLI | EEEEEEEEE-SSSEEEEEEE | xbbbbxabbagaabbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HA.3.94 |