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Information on SUBCLASS 5.1.4
Subclass Accession number: 6343
Subclass: 5.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 42

Average sequence ID (%) : 12.3 +/- 14.1
Average RMSD (Å) : 0.781 +/- 0.325

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXpXpGXXX
(φψ)-conformation: bbpaagpbb
Pattern: xxxxxx[adgknqst]x[dehknqrstw][degnrs][adegknqrst]xx[afgilpvwy]x[acfiklmtv]
Conservation:-0.593-0.740-0.584-0.374-0.559-0.1770.605-0.3440.6863.442-0.142-0.333-0.200-0.204-0.5090.027
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amu_A_4551amu   A459474AVSVHKDHQEQPYLCAEEEEEE-TTS-EEEEEbbbbbbxaaUxwbxbb
1apa_*_2261apa   -229244SPLELKNANGSKWIVLEEEEEE-TTS-EEEEEbpbbbbbaagxpbbba
1bu6_O_2871bu6   O287302LTTIACGPTGEVNYALEEEEEE-TTS-EEEEEbbbbbbxaavxpbbbb
1bv1_*_951bv1   -101116EIKIVATPDGGSILKIEEEEEE-TTS-EEEEEbbbxbxbaavxbbbxb
1d0n_A_671d0n   A7085ILKTVQLRNGILQYDLEEEEEE-TTS-EEEEEbbbbbxxaavxbbbbb
1d4x_G_431d4x   G4661ILKTVQLRNGNLQYDLEEEEEE-TTSSEEEEEbbbbbxbaagxxxbbb
1d6a_A_2221d6a   A225240KPLELVDASGAKWIVLEEEEEE-TTS-EEEEEbpxxbbxaavxxbxba
1e1o_A_1201e1o   A124139RGTLFKTQTGELSIHCEEEEEE-TT--EEEEEbbxxbbxaavxxbbxx
1ecs_A_901ecs   A91106IHAPELQGWGGTMAALEEEEEE-TTSSEEEEEbbxpbpxaNgxbbbbb
1eur_*_2211eur   -223238QQYTIINAAGAFQAVSEEEEEE-TT--EEEEEbxbbbbxaavxxbbbx
1f7s_A_661f7s   A7085YDFDFVTAENCQKSKIEEEEEE-TTS-EEEEEbxxbbbxaalbxbbbx
1ff9_A_3561ff9   A362377HKFEIENKDGSRETRTEEEEEE-TTS-EEEEExbbxbbxaagpbbbbb
1fwx_A_3231fwx   A323338PLHTAFDGRGNAYTSLEEEEEE-TTSEEEEEExabbbbxaavxbbbxb
1ghe_A_1471ghe   A152167LPGYCATPDGRLHPTAEEEEEE-TTS-EEEEEbxlabbxaavxxbxbb
1gtm_A_351gtm   A3954VTIPVEMDDGSVKVFTEEEEEE-TTS-EEEEEbxbwbxxaavbbbbbb
1h6l_A_1821h6l   A185200QYELNADKNGYISGKKEEEEEE-TTSSEEEEEbbxxbxxaavbbbbbx
1h6y_A_861h6y   A90105MKLQYVDGSGTQRYDTEEEEEE-TTS-EEEEEbbbbbbxaavbxbbbx
1hrd_A_561hrd   A6075FRVPWEDDNGKVHVNTEEEEEE-TTS-EEEEEbxbwbbxaavxxbbbb
1i7d_A_2201i7d   A224239VKAHIVTPADERFTAIEEEEEE-TT--EEEEEbbbxxbxaavxbbbbx
1j1q_A_2211j1q   A224239KPLELKNADGTKWIVLEEEEEE-TTS-EEEEEbpbxbbxaavxxbxba
1j9j_A_1821j9j   A186201YFEERVSPFGEKYYWMEEEEEE-TTS-EEEEEebxxbbxaavxxbbbx
1ju3_A_61ju3   A1025SNVMVPMRDGVRLAVDEEEEEE-TTS-EEEEExlxxbxxaavxbbxbb
1juv_A_21juv   A722RYSPTKTVDGFNELAFEEEEEE-TTS-EEEEEbbbxbbxaavxxbbxa
1kjo_A_41kjo   A621TVGVGRGVLGDQKNINEEEEEE-TTS-EEEEEbbbbbbxaavxxbxbx
1mrj_*_2081mrj   -211226SPVVLINAQNQRVTITEEEEEE-TTS-EEEEEbxbxbbxaavxxbbba
1o75_A_691o75   A8095SKQETEDSRGRKKWEYEEEEEE-TTS-EEEEEbbbxbbxaavxbbxbb
1oep_A_51oep   A722HGREVLDSRGNPTVEVEEEEEE-TTS-EEEEEbbbxbxxaavxwbxbb
1ofz_A_731ofz   A7691IRVYCVNKDNILSEFVEEEEEE-TT-BEEEEEbbbbbbxaalbpbbbb
1olz_A_3991olz   A403418VVDRTQALDGTVYDVMEEEEEE-TTS-EEEEEbbbxbbxaavxxbxxx
1one_A_41one   A621YARSVYDSRGNPTVEVEEEEEE-TTS-EEEEEbbbxbbxaavbwbxbb
1pdz_*_41pdz   -621FARTIFDSRGNPTVEVEEEEEE-TTS-EEEEEbxbxbbxaavbwbxbb
1pfo_*_4041pfo   -410425WDEVSYDKEGNEVLTHEEEEEE-TTS-EEEEEbbbxbbxaavxxbbbx
1q16_A_4501q16   A456471PVKRLQLADGSTALVTEEEEEE-TTS-EEEEEwbbxbxxaagxbbxbb
1q8i_A_631q8i   A6681TPLALKDFHRQPVYGLEEEEEE-TTS-EEEEEbxbabbxaavxxbbxx
1qo8_A_2711qo8   A273288VVKLVVNDDHSVVGAVEEEEEE-TTSBEEEEExabxbbxaalbxaebx
1sjy_A_741sjy   A8196GAYLGRFPDGVLILRHEEEEEE-TTS-EEEEEebbbbbxaavxxbbxb
1usr_A_2031usr   A208223LGVLRTTATGRIFFSTEEEEEE-TTS-EEEEEbbbxbbxaavxxbxbx
1uuh_A_1391uuh   A143158ITITIVNRDGTRYVQKEEEEEE-TT--EEEEExxbbbbxaavxxxbbb
1v3e_A_3771v3e   A381396IIVVDKGLNSIPKLKVEEEEEE-TT--EEEEEbbxbbbbaaUxxbbbb
1v8k_A_1021v8k   A105120VHEPKLKVDLTKYLENEEEEEE-TT--EEEEEbxxwbbxaavxxbbbx
1vjf_A_421vjf   A4560KNLFLKDAKGQLWLISEEEEEEETTS-EEEEEbbxbbbxaavxxbbbb
3pro_C_483pro   C5065GSWIERNEDGSFKLVAEEEEEE-TTS-EEEEEebbxbxxaavxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu6_O_2871bu6   O     GOLGLYCEROL E - 303
1d4x_G_431d4x   G     CACALCIUM ION A - 43
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL Q - 97
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL W - 99
1ecs_A_901ecs   A     PG4TETRAETHYLENE GLYCOL M - 103
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Y - 70
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 72
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 86
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 88
1f7s_A_661f7s   A     LDALAURYL DIMETHYLAMINE-N-OXIDE W - 90
1ghe_A_1471ghe   A     MSESELENOMETHIONINE A - 157
1ghe_A_1471ghe   A     MSESELENOMETHIONINE T - 158
1ghe_A_1471ghe   A     MSESELENOMETHIONINE P - 159
1ghe_A_1471ghe   A     MSESELENOMETHIONINE D - 160
1ghe_A_1471ghe   A     MSESELENOMETHIONINE G - 161
1ghe_A_1471ghe   A     MSESELENOMETHIONINE R - 162
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 5
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 6
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 7
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 8
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 21
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 22
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 23
1o75_A_691o75   A     XEXENON E - 72
1o75_A_691o75   A     XEXENON V - 73
1o75_A_691o75   A     XEXENON L - 74
1o75_A_691o75   A     XEXENON M - 104
1oep_A_51oep   A     EDO1,2-ETHANEDIOL R - 9
1oep_A_51oep   A     EDO1,2-ETHANEDIOL E - 10
1oep_A_51oep   A     EDO1,2-ETHANEDIOL V - 11
1ofz_A_731ofz   A     FULBETA-L-FUCOSE I - 74
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Q - 75
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE Q - 75
1ofz_A_731ofz   A     FULBETA-L-FUCOSE I - 76
1ofz_A_731ofz   A     FULBETA-L-FUCOSE R - 77
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE R - 77
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Y - 79
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE Y - 79
1ofz_A_731ofz   A     FULBETA-L-FUCOSE E - 89
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE E - 89
1ofz_A_731ofz   A     FULBETA-L-FUCOSE V - 91
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE V - 91
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Y - 92
1one_A_41one   A     PEPPHOSPHOENOLPYRUVATE R - 14
1one_A_41one   A     PAG2-PHOSPHO-D-GLYCERIC ACID R - 14
1qo8_A_2711qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 271
1qo8_A_2711qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 272
1qo8_A_2711qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 273
1qo8_A_2711qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 274
1v3e_A_3771v3e   A     ZMRZANAMIVIR M - 377
1v3e_A_3771v3e   A     NAGN-ACETYL-D-GLUCOSAMINE I - 391
1v3e_A_3771v3e   A     NAGN-ACETYL-D-GLUCOSAMINE P - 392
1vjf_A_421vjf   A     MSESELENOMETHIONINE H - 43
1vjf_A_421vjf   A     GOLGLYCEROL H - 43
1vjf_A_421vjf   A     GOLGLYCEROL T - 44
1vjf_A_421vjf   A     MSESELENOMETHIONINE F - 48
1vjf_A_421vjf   A     MSESELENOMETHIONINE K - 50
1vjf_A_421vjf   A     MSESELENOMETHIONINE G - 54
1vjf_A_421vjf   A     MSESELENOMETHIONINE L - 56
1vjf_A_421vjf   A     MSESELENOMETHIONINE W - 57
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h6y_A_861h6y   A XBAXYLAN BINDING SITE FOR CHAIN AY - 103
1oep_A_51oep   A AC5EDO BINDING SITE FOR CHAIN AE - 10
1ofz_A_731ofz   A AC1FUL BINDING SITE FOR CHAIN AI - 76
1ofz_A_731ofz   A AC2AFL BINDING SITE FOR CHAIN AR - 77
1ofz_A_731ofz   A AC2AFL BINDING SITE FOR CHAIN AE - 89
1ofz_A_731ofz   A AC1FUL BINDING SITE FOR CHAIN AY - 92

Clusters included in this Subclass
CLUSTER: HA.4.63
CLUSTER: HA.5.19
CLUSTER: HA.6.88