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PDB code:

Information on SUBCLASS 5.1.5

Subclass Accession number: 6344 Subclass: 5.1.5 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 37 Average sequence ID (%) : 14.6 +/- 16.1 Average RMSD (Å) : 0.551 +/- 0.226 Consensus geometry d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a88_A_2	1a88	A	2	12	TVTTSDGTNIF	EEE-TTS-EEE	bbxxaavxxbx
1a8q_*_2	1a8q	-	2	12	ICTTRDGVEIF	EEE-TTS-EEE	bbxxaavxxbx
1bco_*_543	1bco	-	545	555	YCYTLDGRFIC	EEE-TTS-EEE	bxbxaavxxab
1bqb_A_2	1bqb	A	6	16	TGKGVLGDTKD	EEE-TTS-EEE	bbxxaavxbbx
1cy9_A_218	1cy9	A	225	235	STTTPSGEALA	EEE-TTS-EEE	xbbxaagxxbx
1e9i_A_9	1e9i	A	10	20	EIIDSRGNPTV	EEE-TTS-EEE	bbbxaavbwbx
1f89_A_109	1f89	A	114	124	IIFNEDGKLID	EEE-TTS-EEE	xbbbaagxxab
1fc6_A_399	1fc6	A	403	413	VVDLSDGSGVA	EEE-TTS-EEE	bxxbaavxbbx
1fzc_B_309	1fzc	B	313	323	EMEDWKGDKVK	EEE-TTS-EEE	bbbxaavxbbb
1fzd_A_704	1fzd	A	708	718	ELEDWAGNEAY	EEE-TTS-EEE	bbbxaavxbbb
1g5h_A_247	1g5h	A	251	261	DCQDELGRKGS	EEE-TTS-EEE	xbbbaavxxbb
1g8l_A_346	1g8l	A	353	363	LQRNADGELEV	EEE-TTS-EEE	xbxxaalbxbx
1gt1_A_98	1gt1	A	104	114	INVDKHGQTTE	EEE-TT--EEE	bbbxaavxxbb
1h3q_A_70	1h3q	A	74	84	AFVTAGHMRFI	EEE-TT--EEE	bbbxaavxbbb
1hrd_A_56	1hrd	A	63	73	PWEDDNGKVHV	EEE-TTS-EEE	wbbxaavxxbb
1i1n_A_189	1i1n	A	194	204	YDKLQDGSIKM	EEE-TTS-EEE	bbbxaavxbbb
1i7d_A_220	1i7d	A	227	237	HIVTPADERFT	EEE-TT--EEE	xxbxaavxbbb
1io1_A_304	1io1	A	310	320	SYTDNNGKTID	EEE-TTS-EEE	bbbxaavxbbx
1ix2_A_79	1ix2	A	86	96	RAVSSDTHPIT	EE--TT---EE	bbbbaavbpbb
1jc9_A_139	1jc9	A	144	154	DLKDKENDTRY	EEE-TTS-EEE	bbbxaavxbbb
1jlr_A_83	1jlr	A	87	97	EVTTPLDVSYH	EEE-TTS-EEE	bbbxaavbxbx
1jqp_A_49	1jqp	A	49	59	TAYDEVGNSGY	EEE-SSS-EEE	xbbxaavxbbb
1ju2_A_230	1ju2	A	234	244	IYRDSNGTPHQ	EEE-TTS-EEE	bbbxaavxwbb
1kjo_A_4	1kjo	A	9	19	VGRGVLGDQKN	EEE-TTS-EEE	bbbxaavxxbx
1kjv_A_186	1kjv	A	191	201	LHPRPEGDVTL	EEE-TTSSEEE	bbwbaagbbxx
1kt7_A_53	1kt7	A	60	70	RVRLLNNWDVC	EEE-TTS-EEE	xbbxaavxxbx
1mhc_A_186	1mhc	A	191	201	HHPRPKGDVTL	EEE-TTS-EEE	bbxxaagxbxb
1mnn_A_297	1mnn	A	299	309	ELALKNGSKGM	EEE-SSSSEEE	xbxpaavxxpb
1o1z_A_31	1o1z	A	36	46	VRLSKDGKVVV	EEE-TTS-EEE	bbbxaavxxbx
1p1j_A_114	1p1j	A	117	127	LGIDAEGNDVY	EEE-TTS-EEE	aebxaavbpbb
1q2b_A_13	1q2b	A	17	27	QKCSSGGTCTQ	EEE-TTS-EEE	bbbbaagbbbx
1qau_A_104	1qau	A	109	119	TTFTGDGTPKT	EEE-TT--EEE	bbbxaavxwbx
1qo3_A_186	1qo3	A	191	201	HHRRPEGDVTL	EEE-TTSSEEE	bbxbaagxbxx
1r18_A_195	1r18	A	200	210	YDKDANGKVEM	EEE-TTS-EEE	bbbxaavxbbb
1rvk_A_11	1rvk	A	17	27	RHSDSAGHAHP	EEE-TTS-EEE	xbbxaavxxbx
1uyr_A_1537	1uyr	A	1542	1552	LIEDENGELTE	EEE-TTS-EEE	bbxxaavxxbx
3rp2_A_30	3rp2	A	34	44	DIVTEKGLRVI	EEE-TTS-EEE	bbxxaavbxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	A - 101
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	A - 101
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	H - 102
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	H - 102
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 103
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	N - 103
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	L - 115
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	L - 115
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	T - 116
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	T - 116
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	E - 117
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	E - 117
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	L - 118
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	L - 118
1gt1_A_98	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 119
1gt1_A_98	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 119
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	G - 79
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	T - 80
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	Y - 81
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	R - 82
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	W - 85
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	R - 86
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	A - 87
1jlr_A_83	1jlr	A	GTPGUANOSINE-5'-TRIPHOSPHATE	F - 83
1jlr_A_83	1jlr	A	GTPGUANOSINE-5'-TRIPHOSPHATE	F - 101
1kt7_A_53	1kt7	A	RTLRETINOL	A - 55
1kt7_A_53	1kt7	A	RTLRETINOL	T - 56
1kt7_A_53	1kt7	A	RTLRETINOL	A - 57
1kt7_A_53	1kt7	A	RTLRETINOL	V - 61
1kt7_A_53	1kt7	A	RTLRETINOL	L - 63
1kt7_A_53	1kt7	A	RTLRETINOL	A - 71
1kt7_A_53	1kt7	A	RTLRETINOL	M - 73
1kt7_A_53	1kt7	A	RTLRETINOL	V - 74
1kt7_A_53	1kt7	A	RTLRETINOL	G - 75
1kt7_A_53	1kt7	A	RTLRETINOL	F - 77
1qo3_A_186	1qo3	A	EDO1,2-ETHANEDIOL	H - 188
1qo3_A_186	1qo3	A	EDO1,2-ETHANEDIOL	T - 190
1qo3_A_186	1qo3	A	EDO1,2-ETHANEDIOL	W - 204
1qo3_A_186	1qo3	A	EDO1,2-ETHANEDIOL	L - 206
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	F - 11
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	R - 17
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 18
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	D - 20
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 24
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	A - 25
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	H - 26
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	P - 27
1rvk_A_11	1rvk	A	MSESELENOMETHIONINE	Q - 35

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gt1_A_98	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	A - 101
1gt1_A_98	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	N - 103
1gt1_A_98	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	T - 116
1gt1_A_98	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	E - 117

Clusters included in this Subclass

CLUSTER: HA.4.203

CLUSTER: HA.4.34

CLUSTER: HA.5.214

CLUSTER: HA.5.33

CLUSTER: HA.6.23

CLUSTER: HA.6.54

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