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Information on SUBCLASS 5.1.9
Subclass Accession number: 6348
Subclass: 5.1.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 12.0 +/- 12.2
Average RMSD (Å) : 1.100 +/- 0.337

Consensus geometry
d (Å): 11 delta (°): 135-180 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXXGpXX
(φψ)-conformation: bbpaagppa
Pattern: xxx[dstv]x[eps]xx[DNST][DEGPT][ADGKQ][GR][DEKNQR][ntv]xx[aftv]xx[afgmv][DGNQST]xx
Conservation:-0.393-1.083-0.656-0.142-0.2780.0190.160-0.4971.3530.3970.1333.6690.9150.618-0.196-0.605-0.246-0.538-0.759-0.5390.360-0.858-0.835
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aol_*_101aol   -1133YNITWEVTNGDRETVWAISGNHPEEEEEEEE-TTS-EEEEEEEEEEbxxbxbbbxaavxxabbbbbxbp
1coy_*_2611coy   -261283YSVTMEQIDEQGNVVATKVVTADEEEEEEEE-TTS-EEEEEEEEEEbxbxbxxbxaavxxabbbbbbba
1hnf_*_791hnf   -79101DIYKVSIYDTKGKNVLEKIFDLKEEEEEEEEETTS-EEEEEEEEEEbxbbbbbbxaavxxabbbbbbxb
1i31_A_1721i31   A178200LESVNLLMSPQGQVLSAHVSGRVEEEEEEEE-SS--EEEEEEEEEEbbbbbbbbxaagxxabbbbbbbb
1lo7_A_911lo7   A94116QRHSVSRTTPGGDVQLVMRADEIEEEEEEEE-TTS-EEEEEEEEEEbbbbbbbbxaavxxxxabbbbbb
1n9l_A_961n9l   A100122LLTVTPIKTPDGRVSKFVGVQVDEEEEEEEE-TTS-EEEEEEEEEExbbbbwbbxaavxxabbbbbbbx
1q4t_A_1221q4t   A123145WFWDVSLRDDAGRLCAVSSMSIAEEEEEEEE-TT--EEEEEEEEEEbbbbbbbbxaavxxabbbxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE N - 12
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE I - 13
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE T - 14
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE W - 26
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE S - 29
1aol_*_101aol   *     NAGN-ACETYL-D-GLUCOSAMINE N - 31
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A S - 91
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A F - 92
1lo7_A_911lo7   A     EGLETHYLENE GLYCOL R - 95
1lo7_A_911lo7   A     EGLETHYLENE GLYCOL R - 112
1lo7_A_911lo7   A     EGLETHYLENE GLYCOL A - 113
1lo7_A_911lo7   A     EGLETHYLENE GLYCOL D - 114
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A I - 116
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A R - 117
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A V - 118
1lo7_A_911lo7   A     4CO4-HYDROXYPHENACYL COENZYME A A - 120
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE N - 99
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE L - 101
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE V - 103
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE T - 104
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE F - 116
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE V - 117
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE G - 118
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE V - 119
1n9l_A_961n9l   A     FMNFLAVIN MONONUCLEOTIDE Q - 120
1q4t_A_1221q4t   A     4CO4-HYDROXYPHENACYL COENZYME A R - 135
1q4t_A_1221q4t   A     4CO4-HYDROXYPHENACYL COENZYME A C - 137
1q4t_A_1221q4t   A     4CO4-HYDROXYPHENACYL COENZYME A A - 145
1q4t_A_1221q4t   A     4CO4-HYDROXYPHENACYL COENZYME A R - 147
1q4t_A_1221q4t   A     4CO4-HYDROXYPHENACYL COENZYME A P - 148

Clusters included in this Subclass
CLUSTER: HA.4.132
CLUSTER: HA.5.114