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Information on SUBCLASS 5.4.2
Subclass Accession number: 6363
Subclass: 5.4.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.3 (>50 %)  1.3.99 (>50 %)  1.3.99.1
SCOP : 51904 (>50 %)  51905 (>50 %)  51934 (>50 %)  
 Number of loops: 16

Average sequence ID (%) : 15.2 +/- 17.0
Average RMSD (Å) : 0.556 +/- 0.363

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXchpXX
(φψ)-conformation: bbpaalpbb
Pattern: xxx[adegkrst][aden][egs][hnrsty][cfgiklt]x[cfilmvwy]
Conservation:-0.577-0.812-0.539-0.4382.1751.4580.097-0.551-0.512-0.300
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acc_*_6391acc   -646655IEDTEGLKEVEE-TTS-EEEbbxaavxbbx
1amu_A_4071amu   A416425RWLSDGNIEYEE-TTS-EEEbxxaavxxbx
1aun_*_441aun   -5362NFDGAGRGWCEE-TTSBEEEbbxaavbbbb
1b6r_A_1601b6r   A167176ARGFDGSTVFEE-TTS-EEEbbbaavxbbb
1d3b_A_271d3b   A3443EAEDNMNCQMEE-TT--EEEbbbaavxbxb
1d3b_L_261d3b   L3342AFDKHMNLILEE-TT--EEEbbbaavxbbb
1g9g_A_4501g9g   A450459KFNADGTFQIEE-TTS-EEEbbxaavxbbb
1l1y_A_4781l1y   A478487KLYDDGTFAIEE-TTS-EEEbbbaavxbbb
1lci_*_4181lci   -425434YWDEDEHFFIEE-TT--EEEbbxaavxxbx
1lqy_A_721lqy   A7786VTDENGTLYSEE-TTS-EEEbbxaavxxbb
1m6k_A_1991m6k   A201210QDLDNSTKLYEE-TTS-EEEbbxaavxxbb
1mdb_A_4091mdb   A416425RLTRDGYIVVEE-TTS-EEEbbxaavxbbx
1oew_A_671oew   A7685ISYGDGSSSSEE-TTS-EEEbbbaavxbbb
1qho_A_6461qho   A653662IKRADGTIQWEE-TTS-EEExbxaavxbbx
1ry2_A_5551ry2   A562571AKDKDGYIWIEE-TT--EEEbbxaavpbbx
2ncd_A_4742ncd   A482491LEIYNEVLYDEEESSS-EEEbbbaavbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amu_A_4071amu   A     MGMAGNESIUM ION Y - 409
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE T - 411
1amu_A_4071amu   A     MGMAGNESIUM ION T - 411
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE D - 413
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE Y - 425
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE G - 427
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE R - 428
1d3b_L_261d3b   L     GOLGLYCEROL I - 26
1d3b_L_261d3b   L     GOLGLYCEROL I - 28
1d3b_A_271d3b   A     GOLGLYCEROL R - 29
1d3b_A_271d3b   A     GOLGLYCEROL T - 47
1d3b_A_271d3b   A     GOLGLYCEROL V - 48
1d3b_L_261d3b   L     GOLGLYCEROL F - 48
1d3b_A_271d3b   A     GOLGLYCEROL T - 49
1d3b_L_261d3b   L     GOLGLYCEROL K - 50
1l1y_A_4781l1y   A     BGCBETA-D-GLUCOSE S - 489
1l1y_A_4781l1y   A     BGCBETA-D-GLUCOSE D - 490
1lqy_A_721lqy   A     NINICKEL (II) ION H - 97
1m6k_A_1991m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 212
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL T - 213
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 214
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL A - 215
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 216
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1oew_A_671oew   A     THRTHREONINE I - 76
1oew_A_671oew   A     SERSERINE S - 77
1oew_A_671oew   A     THRTHREONINE S - 77
1oew_A_671oew   A     SERSERINE Y - 78
1oew_A_671oew   A     THRTHREONINE Y - 78
1oew_A_671oew   A     SERSERINE G - 79
1oew_A_671oew   A     THRTHREONINE G - 79
1oew_A_671oew   A     SERSERINE D - 80
1qho_A_6461qho   A     MALMALTOSE Q - 648
1qho_A_6461qho   A     MALMALTOSE K - 650
1qho_A_6461qho   A     MALMALTOSE W - 662
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE T - 557
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE G - 558
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE D - 559
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE I - 571
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oew_A_671oew   A AC2THR BINDING SITE FOR CHAIN AS - 77
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AY - 78
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AG - 79

Clusters included in this Subclass
CLUSTER: HA.5.47
CLUSTER: HA.6.94