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Information on SUBCLASS 5.4.3
Subclass Accession number: 6364
Subclass: 5.4.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 17.0 +/- 17.1
Average RMSD (Å) : 0.582 +/- 0.392

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXpppGXXX
(φψ)-conformation: bbpaalpbb
Pattern: [afgiklt]x[DENQSTY][dekrt][DEHKNY][EGN]x[fiktv]x
Conservation:-0.763-0.7770.2690.0220.7492.206-0.913-0.106-0.686
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acc_*_6391acc   -646654IEDTEGLKEEE-TTS-EEbbxaavxbb
1e4e_A_2861e4e   A294302FLQDNGRIVEE-TT--EEbbxaavxxb
1em2_A_2601em2   A263271KNNEYGDTVEE-TT--EEbbbaavxbb
1j18_A_4791j18   A485493IKSKDGTVKEE-TTS-EEbbxaavxxa
1kb0_A_3611kb0   A363371GYDKHGKPIEE-TTS-EEebxaavbxx
1kxr_A_2621kxr   A262270AITFKNLVREE-TTS-EEbxbaalbbx
1lci_*_4181lci   -425433YWDEDEHFFEE-TT--EEbbxaavxxb
1mdb_A_4091mdb   A416424RLTRDGYIVEE-TTS-EEbbxaavxbb
1qmh_A_3261qmh   A327335LIETDGVTREEE-SS-EEbbxaavbbx
1ry2_A_5551ry2   A562570AKDKDGYIWEE-TT--EEbbxaavpbb
1uis_A_881uis   A94102TRYEDGGVFEEETTS-EEbbxaagxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE R - 290
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 290
1e4e_A_2861e4e   A     MGMAGNESIUM ION R - 290
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE D - 292
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 292
1e4e_A_2861e4e   A     MGMAGNESIUM ION D - 292
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE F - 294
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 304
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 304
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 304
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE E - 305
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION V - 306
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 307
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 307
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 307
1em2_A_2601em2   A     MSESELENOMETHIONINE D - 269
1em2_A_2601em2   A     MSESELENOMETHIONINE V - 271
1j18_A_4791j18   A     GLCGLUCOSE E - 480
1j18_A_4791j18   A     GLCGLUCOSE K - 482
1j18_A_4791j18   A     GLCGLUCOSE W - 495
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE T - 411
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE D - 413
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 427
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE R - 428
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE T - 557
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE G - 558
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE D - 559
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE I - 571
1uis_A_881uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE F - 88
1uis_A_881uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE W - 90
1uis_A_881uis   A     CACALCIUM ION W - 90
1uis_A_881uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE R - 92
1uis_A_881uis   A     CACALCIUM ION R - 92
1uis_A_881uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE Q - 106
1uis_A_881uis   A     CACALCIUM ION Q - 106
1uis_A_881uis   A     NRQ[(4R,5R)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-5-HYDROXY-4-(4-HYDROXYBENZYL)-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETALDEHYDE T - 108
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4e_A_2861e4e   A AC1PHY BINDING SITE FOR CHAIN AR - 290

Clusters included in this Subclass
CLUSTER: HA.4.55