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Information on SUBCLASS 5.5.2
Subclass Accession number: 6375
Subclass: 5.5.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 50352 (>75 %)  
 Number of loops: 11

Average sequence ID (%) : 15.5 +/- 19.4
Average RMSD (Å) : 0.382 +/- 0.154

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXXppcXhh
(φψ)-conformation: bpaaalpbb
Pattern: [acfimv]x[dgnrs][aikltv][dekqy][ACDNST][DGNRS]x[acfvy]x
Conservation:0.184-0.189-0.167-1.132-0.5830.8622.204-1.2120.341-0.307
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bm8_*_241bm8   -2635MKRKKDDWVNEEETTT--EEbbxaaavxbx
1ihk_A_1041ihk   A107116IRGVDSGLYLEEETTT--EEbbxaaavxxx
1jgu_H_881jgu   H94103RGDAYSRYFDEEETTT--EEbbxaaavbba
1jlx_A_571jlx   A5968IKSRYTNKYLEEETTT--EEbbxaaavbxx
1jqz_A_531jqz   A5665IKSTETGQYLEEETTT--EEbbxaaavxxx
1knm_A_921knm   A92101VVGVQSGLCLEEETTT--EEbbxaaavxxp
1m2t_B_4721m2t   B472481ILNLKNGLAMEEETTT--EEbbxaaavxbx
1mnn_A_1521mnn   A159168AKNDDDDTEIEEETTT--EEbbxaaavxxb
1n4k_A_3031n4k   A305314FKHLATGHYLEEETTT--EEbxxaaavxbx
1q1a_A_1361q1a   A141150CHCIGCGKVYEEETTT--EEbbxaaavpxb
1q1u_A_531q1u   A5665IQGVKASLYVEEETTT--EEbbxaaalbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jgu_H_881jgu   H     HBC(2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE G - 95
1jgu_H_881jgu   H     HBC(2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE D - 96
1jgu_H_881jgu   H     HBC(2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE A - 97
1jgu_H_881jgu   H     HBC(2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE Y - 98
1jgu_H_881jgu   H     HBC(2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE R - 100
1jlx_A_571jlx   A     FORFORMYL GROUP V - 57
1knm_A_921knm   A     LATLACTOSE D - 102
1knm_A_921knm   A     LATLACTOSE A - 103
1m2t_B_4721m2t   B     NAGN-ACETYL-D-GLUCOSAMINE L - 475
1m2t_B_4721m2t   B     GOLGLYCEROL D - 482
1m2t_B_4721m2t   B     GOLGLYCEROL V - 483
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 143
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS I - 144
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 145
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS C - 146
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS G - 147
1q1a_A_1361q1a   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS K - 148

Clusters included in this Subclass
CLUSTER: HA.4.62
CLUSTER: HA.6.44