ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.6.1

Subclass Accession number: 6379
Subclass: 5.6.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 16

Average sequence ID (%) : 16.2 +/- 20.0
Average RMSD (Å) : 0.656 +/- 0.280

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXpcXpph
(φψ)-conformation:	bbaabaabb

Pattern:	[aiklv]	x	[dknpqst]	x	[deknqs]	[den]	[apqt]	[ADGNRST]	[knqrsty]	[cfikv]	[hlvy]	x
Conservation:	-0.500	-1.444	-0.299	-0.795	1.173	1.760	0.906	0.893	-0.470	0.107	-0.059	-1.272

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cwv_A_866	1cwv	A	870	881	AKSKKFPSYSVS	EEESSSTT-EEE	bbxaabaabbbb
1f9v_A_420	1f9v	A	424	435	VTKIQNTAQVHE	EEEGGGTT-EEE	bbxaabaabbxb
1g72_A_75	1g72	A	77	88	ALNLNDPGKIVW	EEETT-TTSEEE	bbxaabaabxab
1h4i_A_75	1h4i	A	77	88	ALGLDDPGTILW	EEETT-TTSEEE	bbxaabaaxxab
1hxr_A_103	1hxr	A	104	115	WHCLDDKNSFYV	EEETTSTT-EEE	bbxaabaabbbb
1j0w_A_37	1j0w	A	40	51	LWDVQNPRVKLI	EEESSSTT-EEE	bbxaabaaxxab
1j7d_B_23	1j7d	B	26	37	EPDESNARYFHV	EE-SS-TTEEEE	bxxaabaabbbb
1lpb_B_37	1lpb	B	40	51	LYTNENPNNFQE	EE-SSSSSS-EE	xbbaabaabxbx
1lrw_A_75	1lrw	A	77	88	ALDLNEPGKILW	EEETTSTTSEEE	bbxaabaaxbab
1m2t_B_429	1m2t	B	429	440	IRPKQLQSQCLT	EEETT-TTEEEE	bbpaabaabbxb
1nu6_A_430	1nu6	A	433	444	KIQLSDYTKVTC	EEETT-TT-EEE	bbxaabaaxbbx
1onk_B_182	1onk	B	182	193	IRPKQNQDQCLT	EEETT-TTEEEE	bbxaabaabbpb
1qxm_A_104	1qxm	A	106	117	IRNYMNPNLVLQ	EEESS-TTEEEE	xbxaabaabbxb
1qxm_A_14	1qxm	A	17	28	ISPSNNTNKVLD	EEETT-TTEEEE	bbxaabaabbxb
1qxm_A_239	1qxm	A	245	256	LYNLQDTNRVLD	EEETT-TTEEEE	bxxaabaabbxb
1rp1_*_37	1rp1	-	40	51	LYTNKNPNNFQT	EE-SSSSSS-EE	xbbaabaabxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j0w_A_37	1j0w	A	MSESELENOMETHIONINE	P - 54
1qxm_A_14	1qxm	A	EDO1,2-ETHANEDIOL	D - 28
1qxm_A_14	1qxm	A	EDO1,2-ETHANEDIOL	K - 29
1qxm_A_104	1qxm	A	EDO1,2-ETHANEDIOL	V - 104
1qxm_A_104	1qxm	A	EDO1,2-ETHANEDIOL	I - 105

Clusters included in this Subclass

CLUSTER: HA.4.150

CLUSTER: HA.5.173

CLUSTER: HA.5.82

CLUSTER: HA.6.119

CLUSTER: HA.6.67

CLUSTER: HA.7.30