Information on SUBCLASS 5.6.2 |
Subclass Accession number: 6380
Subclass: 5.6.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 20.6 +/- 23.0 Average RMSD (Å) : 1.364 +/- 0.136 Consensus geometry
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Consensus Sequence: | hXXccXpXh |
(φψ)-conformation: | bbaabaabb |
Pattern: | [filv] | x | x | x | [filmv] | x | [adgkns] | [dgkns] | [dn] | [aegpt] | [egknst] | [ksw] | [aflvw] | x | x | [aeknqr] |
Conservation: | 1.521 | -0.785 | -1.088 | -0.016 | 0.362 | -0.606 | -0.588 | 0.276 | 2.856 | -0.372 | 0.219 | -0.023 | 0.151 | -0.406 | -1.142 | -0.359 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cpm_*_46 | 1cpm | - | 48 | 63 | IDIEFLGKDTTKVQFN | EEEEEEGGGTTEEEEE | bbbbbxaabaabbbbb |
1gcq_A_182 | 1gcq | A | 182 | 197 | FIHVMDNSDPNWWKGA | EEEEEE--SSSEEEEE | xbxxabaaxaabbxbb |
1kjw_A_459 | 1kjw | A | 459 | 474 | VLHVIDAGDEEWWQAR | EEEEEE--SSSEEEEE | xbxxabaaxaabbxbb |
1mve_A_56 | 1mve | A | 57 | 72 | VDIEVLGKNPGSFQSN | EEEEEETT-TTEEEEE | bbbbxxaabaabbxxb |
1o7n_B_615 | 1o7n | B | 623 | 638 | VQAAMDVNDKELLHIR | EEEEE-SS-TTEEEEE | xbbbxxaabaabbxbb |
1p32_A_168 | 1p32 | A | 169 | 184 | VVEVIKNDDGKKALVL | EEEEEEGGGTTEEEEE | bbbbbxaabaabbxbb |
1qxm_A_14 | 1qxm | A | 14 | 29 | VFFISPSNNTNKVLDK | EEEEEETT-TTEEEEE | bbbbbxaabaabbxbx |
1sem_A_180 | 1sem | A | 180 | 195 | VITLINKDDPNWWEGQ | EEEEEE-SSSSEEEEE | bbxxabaabaabxbbb |
1uj0_A_228 | 1uj0 | A | 228 | 243 | LITVLDDSDANWWQGE | EEEEEE--SSSEEEEE | xbxxabaaxaabbxbb |
1uti_A_25 | 1uti | A | 25 | 40 | VVEVLDSSNPSWWTGR | EEEEEE--SSSEEEEE | bbxxabaaxaabxbbb |
2ayh_*_104 | 2ayh | - | 106 | 121 | IDIEFLGKDTTKVQFN | EEEEEETT-TTEEEEE | bbbbbxaabaabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gcq_A_182 | 1gcq | A | MPD2-METHYL-2,4-PENTANEDIOL | F - 182 |
1gcq_A_182 | 1gcq | A | MPD2-METHYL-2,4-PENTANEDIOL | I - 183 |
1gcq_A_182 | 1gcq | A | MPD2-METHYL-2,4-PENTANEDIOL | H - 184 |
1gcq_A_182 | 1gcq | A | MPD2-METHYL-2,4-PENTANEDIOL | A - 197 |
1gcq_A_182 | 1gcq | A | MPD2-METHYL-2,4-PENTANEDIOL | C - 198 |
1mve_A_56 | 1mve | A | MSESELENOMETHIONINE | V - 57 |
1mve_A_56 | 1mve | A | MSESELENOMETHIONINE | D - 58 |
1mve_A_56 | 1mve | A | MSESELENOMETHIONINE | I - 59 |
1mve_A_56 | 1mve | A | CACALCIUM ION | I - 59 |
1mve_A_56 | 1mve | A | MSESELENOMETHIONINE | E - 60 |
1mve_A_56 | 1mve | A | MSESELENOMETHIONINE | V - 61 |
1mve_A_56 | 1mve | A | CACALCIUM ION | V - 61 |
1o7n_B_615 | 1o7n | B | EDO1,2-ETHANEDIOL | R - 615 |
1o7n_B_615 | 1o7n | B | EDO1,2-ETHANEDIOL | F - 616 |
1qxm_A_14 | 1qxm | A | EDO1,2-ETHANEDIOL | D - 28 |
1qxm_A_14 | 1qxm | A | EDO1,2-ETHANEDIOL | K - 29 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o7n_B_615 | 1o7n | B | AC3EDO BINDING SITE FOR CHAIN G | R - 638 |
Clusters included in this Subclass |
CLUSTER: HA.6.34 |