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Information on SUBCLASS 5.6.2
Subclass Accession number: 6380
Subclass: 5.6.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 20.6 +/- 23.0
Average RMSD (Å) : 1.364 +/- 0.136

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: hXXccXpXh
(φψ)-conformation: bbaabaabb
Pattern: [filv]xxx[filmv]x[adgkns][dgkns][dn][aegpt][egknst][ksw][aflvw]xx[aeknqr]
Conservation:1.521-0.785-1.088-0.0160.362-0.606-0.5880.2762.856-0.3720.219-0.0230.151-0.406-1.142-0.359
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cpm_*_461cpm   -4863IDIEFLGKDTTKVQFNEEEEEEGGGTTEEEEEbbbbbxaabaabbbbb
1gcq_A_1821gcq   A182197FIHVMDNSDPNWWKGAEEEEEE--SSSEEEEExbxxabaaxaabbxbb
1kjw_A_4591kjw   A459474VLHVIDAGDEEWWQAREEEEEE--SSSEEEEExbxxabaaxaabbxbb
1mve_A_561mve   A5772VDIEVLGKNPGSFQSNEEEEEETT-TTEEEEEbbbbxxaabaabbxxb
1o7n_B_6151o7n   B623638VQAAMDVNDKELLHIREEEEE-SS-TTEEEEExbbbxxaabaabbxbb
1p32_A_1681p32   A169184VVEVIKNDDGKKALVLEEEEEEGGGTTEEEEEbbbbbxaabaabbxbb
1qxm_A_141qxm   A1429VFFISPSNNTNKVLDKEEEEEETT-TTEEEEEbbbbbxaabaabbxbx
1sem_A_1801sem   A180195VITLINKDDPNWWEGQEEEEEE-SSSSEEEEEbbxxabaabaabxbbb
1uj0_A_2281uj0   A228243LITVLDDSDANWWQGEEEEEEE--SSSEEEEExbxxabaaxaabbxbb
1uti_A_251uti   A2540VVEVLDSSNPSWWTGREEEEEE--SSSEEEEEbbxxabaaxaabxbbb
2ayh_*_1042ayh   -106121IDIEFLGKDTTKVQFNEEEEEETT-TTEEEEEbbbbbxaabaabbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gcq_A_1821gcq   A     MPD2-METHYL-2,4-PENTANEDIOL F - 182
1gcq_A_1821gcq   A     MPD2-METHYL-2,4-PENTANEDIOL I - 183
1gcq_A_1821gcq   A     MPD2-METHYL-2,4-PENTANEDIOL H - 184
1gcq_A_1821gcq   A     MPD2-METHYL-2,4-PENTANEDIOL A - 197
1gcq_A_1821gcq   A     MPD2-METHYL-2,4-PENTANEDIOL C - 198
1mve_A_561mve   A     MSESELENOMETHIONINE V - 57
1mve_A_561mve   A     MSESELENOMETHIONINE D - 58
1mve_A_561mve   A     MSESELENOMETHIONINE I - 59
1mve_A_561mve   A     CACALCIUM ION I - 59
1mve_A_561mve   A     MSESELENOMETHIONINE E - 60
1mve_A_561mve   A     MSESELENOMETHIONINE V - 61
1mve_A_561mve   A     CACALCIUM ION V - 61
1o7n_B_6151o7n   B     EDO1,2-ETHANEDIOL R - 615
1o7n_B_6151o7n   B     EDO1,2-ETHANEDIOL F - 616
1qxm_A_141qxm   A     EDO1,2-ETHANEDIOL D - 28
1qxm_A_141qxm   A     EDO1,2-ETHANEDIOL K - 29
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7n_B_6151o7n   B AC3EDO BINDING SITE FOR CHAIN GR - 638

Clusters included in this Subclass
CLUSTER: HA.6.34