ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.10.1

Subclass Accession number: 6386
Subclass: 5.10.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 14

Average sequence ID (%) : 8.1 +/- 11.3
Average RMSD (Å) : 0.993 +/- 0.383

Consensus geometry

d (Å): 7

delta (°): 135-180

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXXpXhXh
(φψ)-conformation:	bbaabppbb

Pattern:	[citvwy]	x	x	x	x	[degknqs]	[cdhkrst]	[adegnpt]	x	x	[filpvwy]
Conservation:	0.682	-0.913	-1.423	-1.288	-0.008	1.215	-0.768	1.411	0.928	-0.123	0.287

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1amw_*_131	1amw	-	137	147	ISKSNDDEQYI	EEE-TTS--EE	bbbxaabxxbb
1aqk_L_36	1aqk	L	38	48	YQHLPGTAPKL	EEE-TTS--EE	bbbbaabxxbx
1g0u_H_173	1g0u	H	176	186	CVMEIGKDAEY	EEEESSS--EE	bbbxaabxxbx
1g9g_A_301	1g9g	A	302	312	WGGGIDSTWSW	EEEESSS--EE	bbbxaabxbbb
1h6l_A_70	1h6l	A	72	82	ITTNKKSGLAV	EEEETTS--EE	bbbbaabxxbb
1iys_A_244	1iys	A	249	259	VIWPENHAPLV	EEE-SSS--EE	bbbxaabxpbb
1kqw_A_48	1kqw	A	52	62	KTLSTFRNYEV	EEE-SS--EEE	bbbbaabbbbb
1m2k_A_117	1m2k	A	121	131	VVRCTSCNNSF	EEEESSSS-EE	bbbxaaxxbbb
1m2o_A_628	1m2o	A	630	640	TSFSMEDDPQP	EEE-SSS--EE	bbbbaabxpbx
1nbf_A_326	1nbf	A	331	341	YIQCKEVDYRS	EEEESSS--EE	bbbxaabxbbb
1nc7_A_38	1nc7	A	43	53	TFLFEDSKPVV	EEEESSS--EE	bbbbaabxxbb
1nd6_A_292	1nd6	A	299	309	YRNETQHEPYP	EE--TTS--EE	bxabaabxpxx
1nww_A_52	1nww	A	52	62	MYQNMPLPPAY	EEEETTS--EE	bbbxaabxxbb
1qy5_A_206	1qy5	A	212	222	TSKHNNDTQHI	EEE-TTS--EE	bbbbaabxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1amw_*_131	1amw	*	ADPADENOSINE-5'-DIPHOSPHATE	S - 138
1h6l_A_70	1h6l	A	CACALCIUM ION	K - 76
1h6l_A_70	1h6l	A	PO4PHOSPHATE ION	K - 76
1kqw_A_48	1kqw	A	RTLRETINOL	T - 51
1kqw_A_48	1kqw	A	RTLRETINOL	K - 52
1kqw_A_48	1kqw	A	RTLRETINOL	T - 53
1kqw_A_48	1kqw	A	RTLRETINOL	L - 54
1kqw_A_48	1kqw	A	RTLRETINOL	S - 55
1kqw_A_48	1kqw	A	RTLRETINOL	F - 57
1kqw_A_48	1kqw	A	RTLRETINOL	R - 58
1kqw_A_48	1kqw	A	RTLRETINOL	N - 59
1kqw_A_48	1kqw	A	RTLRETINOL	Y - 60
1kqw_A_48	1kqw	A	RTLRETINOL	V - 62
1kqw_A_48	1kqw	A	RTLRETINOL	F - 64
1m2k_A_117	1m2k	A	ZNZINC ION	C - 124
1m2k_A_117	1m2k	A	ZNZINC ION	T - 125
1m2k_A_117	1m2k	A	ZNZINC ION	S - 126
1m2k_A_117	1m2k	A	ZNZINC ION	C - 127
1m2k_A_117	1m2k	A	ZNZINC ION	N - 128
1m2k_A_117	1m2k	A	ZNZINC ION	N - 129
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	I - 40
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	R - 41
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	I - 42
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	T - 43
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	F - 44
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	L - 45
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	F - 46
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	S - 49
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	K - 50
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	P - 51
1nc7_A_38	1nc7	A	MSESELENOMETHIONINE	I - 58
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 299
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 300
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 301
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 302
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 308
1nww_A_52	1nww	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	M - 52
1nww_A_52	1nww	A	HPNHEPTANAMIDE	Y - 53
1nww_A_52	1nww	A	HPNHEPTANAMIDE	N - 55
1nww_A_52	1nww	A	HPNHEPTANAMIDE	L - 58
1nww_A_52	1nww	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	Y - 62
1qy5_A_206	1qy5	A	NECN-ETHYL-5'-CARBOXAMIDO ADENOSINE	S - 213

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h6l_A_70	1h6l	A	AC9PRODUCT PO4 502 BINDING SITE FOR CHAIN A	K - 76

Clusters included in this Subclass