Logo
Information on SUBCLASS 5.11.1
Subclass Accession number: 6388
Subclass: 5.11.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 14.8 +/- 17.9
Average RMSD (Å) : 1.088 +/- 0.296

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpXXpXcXh
(φψ)-conformation: bbpappgbb
Pattern: [afimy]xx[agltv][aegpqs]xx[dgknq]x[fipvy]x[filtvy]x
Conservation:0.117-0.537-0.217-0.3210.3270.495-1.5282.6650.820-0.577-0.810-0.173-0.261
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ep0_A_41ep0   A618FIKTSLDGAIIIEEEE-SSTT-EEEEbbxbabpgxbxbb
1ew3_A_821ew3   A90102FDKTEEDGVYSLNEEE-SSTTEEEEEbxxxaxxvbbbbx
1hc7_A_281hc7   A2839ADYGPVRGTIVV.EEE-SSTT-EEE.bbxxaxpvbbbx.
1jqz_A_441jqz   A4557QLSAESVGEVYIKEEEESSTTEEEEEbxbbabpvbbbbb
1k3i_A_4141k3i   A416428IITLGEPGTSPNTEEE--STTS--EEbbbxFxpvxxxxb
1kw3_B_2461kw3   B249261YADTPSPMIEVEFEEE-SSTT-EEEEbbxxaxpvbbbbb
1l6m_A_751l6m   A8394FVPGSQPGEFTL.EEE-SSTTEEEE.bbpxabpvbbbx.
1llu_A_61llu   A921AAVVHAYGAPLRIEEEB-STTS--EEbxbbabxgxpxbx
1mgr_A_721mgr   A7385IITGQQWQEDYYTEEE-SSTT-EEEEbbbbaxplxbbbb
1odv_A_1031odv   A109121MKKALSGDSYWVFEEE-SSTT-EEEEbbxxaxxlbbxbb
1ofn_A_21ofn   A315ARKLAVDGAIEFTEEE-SSTT-EEEEbbxxaxpgxbbbb
1p2z_A_9381p2z   A942954RVHQPHRGVIETVEEE--STT--EEEbbbbwbpvbbbbb
1p30_A_9221p30   A926938RVHRPHRGVIETVEEE--STT--EEEbbbbwbpvbbbbb
1qy1_A_631qy1   A7183ADKTEKAGEYSVTEEE-SSTT-EEEEbbxbaxxvbbbbx
1rjw_A_21rjw   A315AAVVEQFKEPLKIEEEBSSTTS--EEbxbxabxvbpxbx
1vj0_A_41vj0   A820AMVLEKFNQPLVYEEEB-STTS--EEbbbxabxvbpxbx
2a2u_A_642a2u   A7183AYKTPEDGEYFVEEEE-SSTT-EEEEbxxbaxpvxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k3i_A_4141k3i   A     ACTACETATE ION A - 414
1k3i_A_4141k3i   A     ACTACETATE ION H - 415
1kw3_B_2461kw3   B     FE2FE (II) ION Y - 249
1kw3_B_2461kw3   B     FE2FE (II) ION E - 260
1l6m_A_751l6m   A     FEFE (III) ION W - 79
1l6m_A_751l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID W - 79
1l6m_A_751l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID I - 80
1l6m_A_751l6m   A     FEFE (III) ION R - 81
1l6m_A_751l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID R - 81
1l6m_A_751l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID R - 81
1l6m_A_751l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID F - 83
1l6m_A_751l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID L - 94
1mgr_A_721mgr   A     SULSULFATE ANION R - 72
1odv_A_1031odv   A     HC44'-HYDROXYCINNAMIC ACID V - 122
1qy1_A_631qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE M - 69
1qy1_A_631qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE V - 82

Clusters included in this Subclass
CLUSTER: HA.5.78
CLUSTER: HA.6.56
CLUSTER: HA.7.13