Information on SUBCLASS 5.11.1 |
Subclass Accession number: 6388
Subclass: 5.11.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 17 Average sequence ID (%) : 14.8 +/- 17.9 Average RMSD (Å) : 1.088 +/- 0.296 Consensus geometry
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Consensus Sequence: | XpXXpXcXh |
(φψ)-conformation: | bbpappgbb |
Pattern: | [afimy] | x | x | [agltv] | [aegpqs] | x | x | [dgknq] | x | [fipvy] | x | [filtvy] | x |
Conservation: | 0.117 | -0.537 | -0.217 | -0.321 | 0.327 | 0.495 | -1.528 | 2.665 | 0.820 | -0.577 | -0.810 | -0.173 | -0.261 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ep0_A_4 | 1ep0 | A | 6 | 18 | FIKTSLDGAIIIE | EEE-SSTT-EEEE | bbxbabpgxbxbb |
1ew3_A_82 | 1ew3 | A | 90 | 102 | FDKTEEDGVYSLN | EEE-SSTTEEEEE | bxxxaxxvbbbbx |
1hc7_A_28 | 1hc7 | A | 28 | 39 | ADYGPVRGTIVV. | EEE-SSTT-EEE. | bbxxaxpvbbbx. |
1jqz_A_44 | 1jqz | A | 45 | 57 | QLSAESVGEVYIK | EEEESSTTEEEEE | bxbbabpvbbbbb |
1k3i_A_414 | 1k3i | A | 416 | 428 | IITLGEPGTSPNT | EEE--STTS--EE | bbbxFxpvxxxxb |
1kw3_B_246 | 1kw3 | B | 249 | 261 | YADTPSPMIEVEF | EEE-SSTT-EEEE | bbxxaxpvbbbbb |
1l6m_A_75 | 1l6m | A | 83 | 94 | FVPGSQPGEFTL. | EEE-SSTTEEEE. | bbpxabpvbbbx. |
1llu_A_6 | 1llu | A | 9 | 21 | AAVVHAYGAPLRI | EEEB-STTS--EE | bxbbabxgxpxbx |
1mgr_A_72 | 1mgr | A | 73 | 85 | IITGQQWQEDYYT | EEE-SSTT-EEEE | bbbbaxplxbbbb |
1odv_A_103 | 1odv | A | 109 | 121 | MKKALSGDSYWVF | EEE-SSTT-EEEE | bbxxaxxlbbxbb |
1ofn_A_2 | 1ofn | A | 3 | 15 | ARKLAVDGAIEFT | EEE-SSTT-EEEE | bbxxaxpgxbbbb |
1p2z_A_938 | 1p2z | A | 942 | 954 | RVHQPHRGVIETV | EEE--STT--EEE | bbbbwbpvbbbbb |
1p30_A_922 | 1p30 | A | 926 | 938 | RVHRPHRGVIETV | EEE--STT--EEE | bbbbwbpvbbbbb |
1qy1_A_63 | 1qy1 | A | 71 | 83 | ADKTEKAGEYSVT | EEE-SSTT-EEEE | bbxbaxxvbbbbx |
1rjw_A_2 | 1rjw | A | 3 | 15 | AAVVEQFKEPLKI | EEEBSSTTS--EE | bxbxabxvbpxbx |
1vj0_A_4 | 1vj0 | A | 8 | 20 | AMVLEKFNQPLVY | EEEB-STTS--EE | bbbxabxvbpxbx |
2a2u_A_64 | 2a2u | A | 71 | 83 | AYKTPEDGEYFVE | EEE-SSTT-EEEE | bxxbaxpvxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1k3i_A_414 | 1k3i | A | ACTACETATE ION | A - 414 |
1k3i_A_414 | 1k3i | A | ACTACETATE ION | H - 415 |
1kw3_B_246 | 1kw3 | B | FE2FE (II) ION | Y - 249 |
1kw3_B_246 | 1kw3 | B | FE2FE (II) ION | E - 260 |
1l6m_A_75 | 1l6m | A | FEFE (III) ION | W - 79 |
1l6m_A_75 | 1l6m | A | DBH2,3-DIHYDROXY-BENZOIC ACID | W - 79 |
1l6m_A_75 | 1l6m | A | DBH2,3-DIHYDROXY-BENZOIC ACID | I - 80 |
1l6m_A_75 | 1l6m | A | FEFE (III) ION | R - 81 |
1l6m_A_75 | 1l6m | A | DBH2,3-DIHYDROXY-BENZOIC ACID | R - 81 |
1l6m_A_75 | 1l6m | A | DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID | R - 81 |
1l6m_A_75 | 1l6m | A | DBH2,3-DIHYDROXY-BENZOIC ACID | F - 83 |
1l6m_A_75 | 1l6m | A | DBH2,3-DIHYDROXY-BENZOIC ACID | L - 94 |
1mgr_A_72 | 1mgr | A | SULSULFATE ANION | R - 72 |
1odv_A_103 | 1odv | A | HC44'-HYDROXYCINNAMIC ACID | V - 122 |
1qy1_A_63 | 1qy1 | A | PRZ2-ISOBUTYL-3-METHOXYPYRAZINE | M - 69 |
1qy1_A_63 | 1qy1 | A | PRZ2-ISOBUTYL-3-METHOXYPYRAZINE | V - 82 |
Clusters included in this Subclass |
CLUSTER: HA.5.78 |
CLUSTER: HA.6.56 |
CLUSTER: HA.7.13 |