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Information on SUBCLASS 5.16.1
Subclass Accession number: 6394
Subclass: 5.16.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 26.9 +/- 26.3
Average RMSD (Å) : 0.740 +/- 0.357

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXppPhXh
(φψ)-conformation: bbapbwpbb
Pattern: [acgiw][actv][itvw]x[EGKQST][eknt][P][AIPV][kqtwy][CFGIV]
Conservation:-0.721-0.281-0.286-0.389-0.086-0.2322.7820.047-0.507-0.326
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aog_A_3641aog   A364373SAVFSIPPIGEEE--SS-EEbbbaxbwxbb
1c2a_A_721c2a   A7382ICTRSNPPTCEE-SSSS-EEbbxaxbwxbb
1clo_L_841clo   L8998QHWSSKPPTFEE-SSSS-EEbbbabxwwbb
1eaq_A_1491eaq   A150159ITVFTNPPQVEEE-SSS-EEbbbaxbwxbb
1fec_A_3631fec   A363372CAVFSIPPMGEEE--SS-EEbbbaxbwxbb
1fmk_*_3251fmk   -327336AVVSEEPIYIEEE-SSS-EEbbbapbbxbb
1ijq_A_5091ijq   A512521WTDWGTPAKIEEE-SSS-EEbxbaxbwxbb
1mp8_A_4861mp8   A488497GVITENPVWIEEE-SSS-EEebbabpwxbb
1qcf_A_3251qcf   A327336AVVTKEPIYIEEE-SSS-EEbbbabxwxbb
1qpc_A_3031qpc   A305314AVVTQEPIYIEEE-SSS-EEbbbabxwxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aog_A_3641aog   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 365
1aog_A_3641aog   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 367
1eaq_A_1491eaq   A     MSESELENOMETHIONINE T - 149
1eaq_A_1491eaq   A     MSESELENOMETHIONINE I - 150
1eaq_A_1491eaq   A     MSESELENOMETHIONINE T - 151
1eaq_A_1491eaq   A     MSESELENOMETHIONINE V - 152
1eaq_A_1491eaq   A     MSESELENOMETHIONINE V - 159
1fec_A_3631fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 364
1fec_A_3631fec   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 366
1mp8_A_4861mp8   A     ADPADENOSINE-5'-DIPHOSPHATE M - 499
1mp8_A_4861mp8   A     ADPADENOSINE-5'-DIPHOSPHATE E - 500
1qcf_A_3251qcf   A     PP11-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE L - 325
1qcf_A_3251qcf   A     PP11-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE I - 336
1qcf_A_3251qcf   A     PP11-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE I - 337
1qcf_A_3251qcf   A     PP11-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE T - 338
1qpc_A_3031qpc   A     EDO1,2-ETHANEDIOL I - 314
1qpc_A_3031qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 316
1qpc_A_3031qpc   A     EDO1,2-ETHANEDIOL T - 316
1qpc_A_3031qpc   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 317

Clusters included in this Subclass
CLUSTER: HA.4.83
CLUSTER: HA.5.90
CLUSTER: HA.6.39