Information on SUBCLASS 4.2.1 |
Subclass Accession number: 641
Subclass: 4.2.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 127 Average sequence ID (%) : 16.4 +/- 17.4 Average RMSD (Å) : 0.445 +/- 0.166 Consensus geometry
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Consensus Sequence: | XXXpcpXX |
(φψ)-conformation: | bbaagpbb |
Pattern: | x | x | x | [adegknqrst] | [adegknqrst] | [adegknqrst] | [adegknqrst] | x | x |
Conservation: | -0.238 | -0.936 | -0.488 | -0.363 | 1.421 | 1.879 | -0.050 | -0.170 | -1.056 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a12_A_130 | 1a12 | A | 133 | 141 | ALTDDGRVF | EEETTS-EE | bbxaavbbb |
1a12_A_183 | 1a12 | A | 186 | 194 | MLTADGDLY | EEETTS-EE | bxxaavxbb |
1a12_A_251 | 1a12 | A | 254 | 262 | AISHEGHVY | EEETT--EE | bbxaavxxb |
1a12_A_305 | 1a12 | A | 308 | 316 | CMDSEGKAY | EEETTS-EE | bbbaavbbb |
1a12_A_356 | 1a12 | A | 359 | 367 | AVTKDGRVF | EEETTS-EE | bxxaavbbb |
1a12_A_78 | 1a12 | A | 81 | 89 | CLSKSGQVY | EEETTS-EE | bbxaavxbb |
1a1x_*_21 | 1a1x | - | 22 | 30 | YRDEYQRTW | EEETTS-EE | bbxaavxxb |
1a2p_A_87 | 1a2p | A | 89 | 97 | LYSSDWLIY | EEETT--EE | bbxaavxbb |
1acf_*_18 | 1acf | - | 21 | 29 | ILGLDGNTW | EEETTS-EE | bbxaavxxa |
1aln_*_211 | 1aln | - | 215 | 223 | LECKDGRIF | EEETTS-EE | bbxaavxbb |
1aln_*_74 | 1aln | - | 77 | 85 | ARGVSGTWY | EEETTS-EE | xbxaagxbb |
1an8_*_155 | 1an8 | - | 160 | 168 | IGTKDGKHE | EEETTS-EE | xbbaavxbb |
1apy_B_279 | 1apy | B | 283 | 291 | CANVTGSYG | EEETTS-EE | bbxaagxbb |
1at0_*_311 | 1at0 | - | 315 | 323 | LHTDGGAVL | EEETTS-EE | bbbaagxbb |
1avq_A_120 | 1avq | A | 120 | 128 | GLCSDGNGL | EEETTS-EE | ebxaavxxb |
1b37_A_247 | 1b37 | A | 249 | 257 | VKTEDNSVY | EEETTS-EE | bbbaavxbb |
1b3a_A_39 | 1b3a | A | 41 | 49 | FVTRKNRQV | EEETT--EE | xbxaavxbb |
1ca1_*_275 | 1ca1 | - | 280 | 288 | IKTKDGKTQ | EEETTS-EE | bbxaavxbb |
1cb8_A_215 | 1cb8 | A | 215 | 223 | GLQYDYSYL | EEETTS-EE | exxaavxbb |
1clc_*_77 | 1clc | - | 80 | 88 | VVKEDGTIV | EEETTSBEE | xbxaagxxa |
1cm9_A_43 | 1cm9 | A | 45 | 53 | FLTKRGRQV | EEETTS-EE | bbxaagxbb |
1d7y_A_217 | 1d7y | A | 218 | 226 | VLLDDGTRI | EEETTS-EE | xbxaavxbb |
1d7y_A_91 | 1d7y | A | 92 | 100 | VALSDGRTL | EEETTS-EE | bxbaavxbb |
1d8c_A_197 | 1d8c | A | 200 | 208 | IQLKNGKET | EEETTS-EE | bbbaagxbb |
1d8c_A_317 | 1d8c | A | 319 | 327 | YTAADGSEI | EEETTS-EE | bbxaavxxb |
1dok_A_40 | 1dok | A | 43 | 51 | FKTIVAKEI | EEETT--EE | xbxaavxbb |
1dq3_A_82 | 1dq3 | A | 85 | 93 | IITNKGTKI | EEETT--EE | bbxaagpbb |
1e0b_A_287 | 1e0b | A | 291 | 299 | LTWKNGAIS | EEETTS-EE | bbxaagxbb |
1e1a_A_93 | 1e1a | A | 96 | 104 | VVQTDGTFE | EEETTS-EE | bbxaagxbb |
1ec7_A_35 | 1ec7 | A | 43 | 51 | IKDNSGHTG | EEETTS-EE | bbbaavbbb |
1eem_A_74 | 1eem | A | 75 | 83 | LENSQGQLI | EEETT--EE | bbbaavxbb |
1ekm_A_405 | 1ekm | A | 412 | 420 | VFMQDGAIR | EEETTS-EE | bbbaavxbb |
1erj_A_457 | 1erj | A | 460 | 468 | TGAEDRLIR | EEETTS-EE | bbbaavbbb |
1erj_A_541 | 1erj | A | 544 | 552 | AGSLDRAVR | EEETTS-EE | bxbaavbbb |
1ew0_A_149 | 1ew0 | A | 152 | 160 | VSATDGTIV | EEETTSBEE | bbxaavxxa |
1f1u_A_176 | 1f1u | A | 181 | 189 | IKDSDGVTY | EE-TT--EE | bbxaavxxa |
1f2l_A_39 | 1f2l | A | 41 | 49 | LETRQHRLF | EEETT--EE | xbxaavxbb |
1fec_A_265 | 1fec | A | 267 | 275 | VVFESGAEA | EEETTS-EE | bbxaagxbb |
1g6o_A_55 | 1g6o | A | 58 | 66 | VLKNNGEWQ | EEETTS-EE | bbxaavxxb |
1g99_A_40 | 1g99 | A | 43 | 51 | QKKFDGKKL | EEETTS-EE | bbxaavxbb |
1ggx_A_91 | 1ggx | A | 97 | 105 | MNFEDGGVV | EEETTS-EE | bbxaagxbb |
1gpr_*_69 | 1gpr | - | 72 | 80 | LQSDGGREI | EEETTS-EE | bbxaavxxb |
1gqz_A_58 | 1gqz | A | 62 | 70 | IFNADGSEV | EEETTS-EE | bbxaavbxb |
1gxj_A_639 | 1gxj | A | 639 | 647 | IATLDGELI | EEETTS-EE | bbbaavxbb |
1gxr_A_588 | 1gxr | A | 591 | 599 | SCCSDGNIA | EEETTS-EE | bxxaavxbx |
1gxr_A_671 | 1gxr | A | 674 | 682 | VGMESSNVE | EEETTS-EE | bxbaavxbb |
1gxr_A_753 | 1gxr | A | 756 | 764 | TGSGDKKAT | EEETTS-EE | bbbaalbbb |
1h6d_A_304 | 1h6d | A | 309 | 317 | MRFRSGALS | EEETTS-EE | bbbaagxbb |
1h6h_A_38 | 1h6h | A | 45 | 53 | VKTKGGSKY | EEETTS-EE | bbbaavxbb |
1h6l_A_81 | 1h6l | A | 82 | 90 | VYSLEGKML | EEETT--EE | bbxaagxxa |
1h9k_A_22 | 1h9k | A | 27 | 35 | ILLGGGDKL | EEETTS-EE | bxxaagxbb |
1i0v_A_76 | 1i0v | A | 79 | 87 | VFNENNQLA | EEETT--EE | bbbaavxxa |
1i7n_A_370 | 1i7n | A | 376 | 384 | VHGKDGKDY | EEETTS-EE | bbxaavbxb |
1i8a_A_94 | 1i8a | A | 98 | 106 | RVNYMNEQT | EEETT--EE | bbxaavxxb |
1i9g_A_12 | 1i9g | A | 15 | 23 | LTDAKGRRY | EEETT--EE | bbxaavxxb |
1ihr_A_177 | 1ihr | A | 181 | 189 | DVTPDGRVD | EE-TTS-EE | bbxaavxxb |
1itw_A_194 | 1itw | A | 200 | 208 | LIAKDGSST | EEETTS-EE | bbxaagpbb |
1ivw_A_384 | 1ivw | A | 389 | 397 | YLYLDGTIE | EEETTS-EE | bbbaavxbb |
1iwl_A_137 | 1iwl | A | 142 | 150 | AVEQDDQRS | EEETT--EE | bbbaavxbb |
1j1l_A_75 | 1j1l | A | 75 | 83 | HEDFCGHTG | EEETTS-EE | bbbaavxbe |
1j3w_A_31 | 1j3w | A | 34 | 42 | LIDRKGFVL | EEETTS-EE | bbxaagxxa |
1jdr_A_221 | 1jdr | A | 223 | 231 | WDSKSGYMM | EEETTS-EE | xbbaavbbb |
1ji6_A_578 | 1ji6 | A | 582 | 590 | VQNSNNDFL | EEETT--EE | bbbaavxbb |
1jj2_A_53 | 1jj2 | A | 58 | 66 | VEFEDGDRR | EEETTS-EE | bbxaavxbb |
1jof_A_168 | 1jof | A | 173 | 181 | RKLASGEVE | EE-TTS-EE | bxxaagxbb |
1jpm_A_25 | 1jpm | A | 36 | 44 | ITYDSGAVG | EEETTS-EE | bbbaagxbb |
1js8_A_2808 | 1js8 | A | 2814 | 2822 | VCTKDGECT | EEETTS-EE | bbxaagxbb |
1jtk_A_26 | 1jtk | A | 30 | 38 | LLTKDGKVY | EEETTS-EE | bbxaavxbb |
1ju3_A_459 | 1ju3 | A | 466 | 474 | DVFPDGRAI | EE-TTS-EE | bxxaagpbx |
1jx4_A_281 | 1jx4 | A | 288 | 296 | AVTEDLDIV | EEETTS-EE | bbxaavxbb |
1jz7_A_309 | 1jz7 | A | 315 | 323 | LHTADGTLI | EEETTS-EE | bbxaagxxa |
1jz7_A_847 | 1jz7 | A | 857 | 865 | RIDGSGQMA | EEETTS-EE | bbbaavxbx |
1k0g_A_393 | 1k0g | A | 396 | 404 | YLSFCGNMD | EEETTS-EE | bbxaagxbb |
1k2x_B_275 | 1k2x | B | 279 | 287 | AIDHEGNVA | EEETT--EE | bbxaavxbb |
1k32_A_647 | 1k32 | A | 650 | 658 | VRKDDGKIY | EEETTS-EE | bbbaavxxb |
1k3b_A_49 | 1k3b | A | 50 | 58 | AYDDLGNSG | EEETT--EE | bbbaavxbb |
1k8k_C_110 | 1k8k | C | 113 | 121 | VGSGSRVIS | EEETTSSEE | bxbaavbbx |
1k8k_C_156 | 1k8k | C | 159 | 167 | AGSCDFKCR | EEETTS-EE | bbbaavbbb |
1k8k_C_66 | 1k8k | C | 69 | 77 | TCGTDRNAY | EEETTS-EE | bbbaavxbb |
1kcf_A_52 | 1kcf | A | 58 | 66 | SQNEDSKVI | EE-TTS-EE | bxxaavxxb |
1khb_A_361 | 1khb | A | 361 | 369 | AETSDGGVY | EEETTS-EE | xbxaavbbb |
1kko_A_47 | 1kko | A | 57 | 65 | LILENGAVA | EEETTS-EE | bxxaavxbx |
1kq6_A_29 | 1kq6 | A | 30 | 38 | VKWQDLSEK | EEETT--EE | bxxaavxbb |
1kqf_B_118 | 1kqf | B | 119 | 127 | IQYANGIVD | EEETTS-EE | bbxaagxbb |
1kt7_A_39 | 1kt7 | A | 46 | 54 | SVDENGHMS | EE-TT--EE | bbxaavxxb |
1lr7_A_102 | 1lr7 | A | 102 | 110 | VCGLDGKTY | EEETTS-EE | bbxaavbxb |
1m2t_A_53 | 1m2t | A | 58 | 66 | LTNAGGDTI | EEETTS-EE | bbxaavxbb |
1m4v_A_163 | 1m4v | A | 166 | 174 | VIMKDGGYY | EEETTS-EE | bxxaavxbb |
1m5q_1_47 | 1m5q | 1 | 52 | 60 | ASNKAGEKF | EEETT--EE | xbbaavxbb |
1mby_A_859 | 1mby | A | 864 | 872 | VQFNDGSQL | EEETTS-EE | bbxaavxbb |
1mda_H_338 | 1mda | H | 341 | 349 | IYDAASDQD | EEESSS-EE | bbxaaGpxa |
1mdb_A_409 | 1mdb | A | 416 | 424 | RLTRDGYIV | EE-TTS-EE | bbxaavxbb |
1msw_D_418 | 1msw | D | 419 | 427 | NMDWRGRVY | EEETTS-EE | bbxaagpxb |
1muc_A_31 | 1muc | A | 39 | 47 | VRCSDGVEG | EEETTS-EE | bbbaavxbb |
1n8j_A_119 | 1n8j | A | 123 | 131 | VVDPQGIIQ | EE-TTSBEE | xbxaavxxa |
1nbw_A_476 | 1nbw | A | 477 | 485 | IRHENGAVE | EEETTS-EE | bbpaagxbb |
1nij_A_56 | 1nij | A | 58 | 66 | KTLTNGCIC | EEETTS-EE | xxxaavxbb |
1nm8_A_306 | 1nm8 | A | 309 | 317 | IVAEDGSCG | EEETTS-EE | bbxaagxbe |
1nr0_A_162 | 1nr0 | A | 165 | 173 | SGSDDNTVA | EEETTS-EE | bbbaavbbb |
1nr0_A_297 | 1nr0 | A | 299 | 307 | SISANGFIN | EEETT--EE | bbxaavpbb |
1nr0_A_338 | 1nr0 | A | 341 | 349 | SADAEGHIN | EEETTS-EE | bbbaavxbb |
1nr0_A_505 | 1nr0 | A | 508 | 516 | ATDQSRKVI | EEETTS-EE | bbbaavxbb |
1nr0_A_550 | 1nr0 | A | 553 | 561 | TGSLDNSVI | EEETTS-EE | bbbaavbbb |
1nr0_A_594 | 1nr0 | A | 597 | 605 | SAGQDSNIK | EEETTS-EE | bbbaavxbb |
1nr0_A_73 | 1nr0 | A | 76 | 84 | SGDVHGNVR | EEETTSEEE | bbbaagxbx |
1nr4_A_39 | 1nr4 | A | 41 | 49 | FVTVQGRAI | EEETTS-EE | xbxaavxbb |
1nwz_A_29 | 1nwz | A | 32 | 40 | QLDGDGNIL | EEETT-BEE | bbxaavxxa |
1o54_A_13 | 1o54 | A | 16 | 24 | LSFEDESEF | EEETTS-EE | bbbaavxbb |
1o6y_A_144 | 1o6y | A | 145 | 153 | MISATNAVK | EEETTS-EE | bbxaavxxb |
1oac_A_468 | 1oac | A | 473 | 481 | IFHENGTIG | EEETTS-EE | bxbaavxbb |
1omw_A_618 | 1omw | A | 622 | 630 | LKIRGGKQF | EEETTS-EE | bxbaavxbb |
1ono_A_256 | 1ono | A | 260 | 268 | VRYQDGSVL | EEETTS-EE | bxbaagxbb |
1ooy_A_364 | 1ooy | A | 364 | 372 | QVSKYGDLA | EEETT--EE | bbxaagxbb |
1osp_O_185 | 1osp | O | 190 | 198 | NISKSGEVS | EEETT--EE | bbxaavxbb |
1p0z_A_56 | 1p0z | A | 59 | 67 | VGDASGQRL | EEETTSBEE | bbxaavxxa |
1pgu_A_221 | 1pgu | A | 224 | 232 | TVGSDRKIS | EEETT--EE | bbbaavxbx |
1pgu_A_311 | 1pgu | A | 314 | 322 | SLSLDGTLN | EEETTS-EE | bbxaavxxb |
1pgu_A_555 | 1pgu | A | 558 | 566 | TGSLDTNIF | EEETTS-EE | bbbaavxbb |
1pgu_A_597 | 1pgu | A | 600 | 608 | SSGADACIK | EEETTS-EE | bbbaavbbb |
1q1r_A_226 | 1q1r | A | 229 | 237 | VLCEDGTRL | EEETTS-EE | bbxaavxbb |
1q1r_A_92 | 1q1r | A | 93 | 101 | VILSDGRAL | EEETTS-EE | bxxaavxbb |
1q7f_A_937 | 1q7f | A | 940 | 948 | VFNYEGQYL | EEETT--EE | bbbaavxxa |
1q7h_A_108 | 1q7h | A | 109 | 117 | VKSSKGYFI | EEETTS-EE | xbxaagxxa |
1q8i_A_152 | 1q8i | A | 158 | 166 | ETTRHGELY | EE-TTS-EE | bbxaavxpa |
1qb5_D_36 | 1qb5 | D | 39 | 47 | VVSSTGGVW | EEETTS-EE | bbxaavxbb |
1qdl_A_359 | 1qdl | A | 363 | 371 | FISADGNAE | EEETTS-EE | bbxaavxbb |
1qft_A_97 | 1qft | A | 100 | 108 | YETEDGQVF | EEETT--EE | xbxaavxbb |
1qi9_A_528 | 1qi9 | A | 530 | 538 | KLFQDGTFT | EEETTS-EE | bbbaagxbb |
1quq_B_66 | 1quq | B | 72 | 80 | RVTAKATIL | EE-TTS-EE | bxxaavbbx |
1r0r_I_23 | 1r0r | I | 23 | 31 | LCGSDNKTY | EEETTS-EE | bbxaavbxb |
1r0t_B_30 | 1r0t | B | 30 | 38 | VCGTDGVTY | EEETTS-EE | bbxaavbxb |
1rfs_*_131 | 1rfs | - | 131 | 139 | QYNNQGRVV | EEETT--EE | bbxaavxxa |
1ri6_A_152 | 1ri6 | A | 157 | 165 | TVSDDGHLV | EE-TTS-EE | xxxaavxbb |
1ri6_A_16 | 1ri6 | A | 21 | 29 | NLNHEGALT | EE-TTS-EE | xbxaavxbb |
1rie_*_163 | 1rie | - | 164 | 172 | HYDASGRIR | EEETT--EE | bbxaavxxa |
1rl2_A_88 | 1rl2 | A | 93 | 101 | INYADGEKR | EEETTS-EE | bbxaavxbb |
1rvk_A_39 | 1rvk | A | 40 | 48 | VRTEDGQEG | EEETTS-EE | bbbaavxbb |
1s0a_A_36 | 1s0a | A | 37 | 45 | LILSDGRRL | EEETTS-EE | bbxaavxbb |
1s3e_A_245 | 1s3e | A | 247 | 255 | VETLNHEMY | EEETTS-EE | bbbaavxbb |
1suu_A_507 | 1suu | A | 511 | 519 | MLTKKGFLK | EEETT-BEE | bbxaavxbb |
1tbg_A_240 | 1tbg | A | 243 | 251 | TGSDDATCR | EEETTS-EE | bbbaavbbb |
1tbg_A_284 | 1tbg | A | 287 | 295 | AGYDDFNCN | EEETTS-EE | bxbaavbbb |
1tbg_A_327 | 1tbg | A | 329 | 337 | TGSWDSFLK | EEETTS-EE | bbbaavbbb |
1tgs_I_23 | 1tgs | I | 23 | 31 | VCGTDGITY | EEETTS-EE | bxpaavxxx |
1tvx_A_55 | 1tvx | A | 58 | 66 | ATLKDGRKI | EEETTS-EE | bbxaavxbb |
1umw_A_422 | 1umw | A | 425 | 433 | YQLCDNSVG | EEETTS-EE | bbxaavxbb |
1umw_A_432 | 1umw | A | 434 | 442 | VLFNDSTRL | EEETTS-EE | bbxaavxbb |
1umw_A_520 | 1umw | A | 523 | 531 | LHLSNGSVQ | EEETTS-EE | bbxaavxbb |
1unn_C_285 | 1unn | C | 290 | 298 | LKFDDFQQT | EEETTS-EE | bbbaavxbb |
1ute_A_283 | 1ute | A | 287 | 295 | YIEASGKSL | EEETTS-EE | xbxaavxxa |
1uun_A_159 | 1uun | A | 166 | 174 | LIASTGDSV | EEETTS-EE | bbxaagpbb |
1v04_A_244 | 1v04 | A | 249 | 257 | EKHANWTLT | EE-TTS-EE | xxxaavpbb |
1vmo_A_105 | 1vmo | A | 108 | 116 | FRCSDEAVL | EEETTS-EE | bbxaavxbb |
1vmo_A_52 | 1vmo | A | 55 | 63 | LRCLDGSVI | EEETTS-EE | bbbaavxbb |
1who_*_64 | 1who | - | 68 | 76 | FLTEKGMKN | EEETTS-EE | bbbaagxbb |
2bbk_H_178 | 2bbk | H | 181 | 189 | MHCRDGSLA | EEETTS-EE | bbxaagxbb |
2dkb_*_36 | 2dkb | - | 37 | 45 | VYDADGRAI | EEETT--EE | bbxaavxxb |
2f5b_H_48 | 2f5b | H | 52 | 60 | IIYSDDDKR | EEETT--EE | bbbaavxbb |
2gac_B_255 | 2gac | B | 259 | 267 | ALNKKGEYG | EEETTS-EE | bbbaavxbb |
2gsa_A_51 | 2gsa | A | 52 | 60 | AWDVDGNRY | EEETTS-EE | bbxaavxbb |
2mnr_*_32 | 2mnr | - | 39 | 47 | LATSAGVVG | EEETTS-EE | bxbaavbbx |
2oat_A_69 | 2oat | A | 70 | 78 | LWDVEGRKY | EEETT--EE | bbxaavxbb |
2pva_A_69 | 2pva | A | 70 | 78 | GVNEKGLMG | EEETTS-EE | ebbaavxbb |
2scu_B_193 | 2scu | B | 202 | 210 | VITKQGDLI | EEETTS-EE | bxxaavbxb |
2sli_*_147 | 2sli | - | 152 | 160 | YITNSGGIG | EEETTS-EE | bbbaavxbb |
3nul_*_22 | 3nul | - | 25 | 33 | ILGQDGSVW | EEETTS-EE | bbxaavxxa |
3tss_*_152 | 3tss | - | 156 | 164 | ITMNDGSTY | EEETTS-EE | bbxaavxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1an8_*_155 | 1an8 | * | ZNATHIS SITE ALSO INCLUDES HIS 81 FROM A SYMMETRY-RELATED MOLECULE. | H - 167 |
1gxr_A_671 | 1gxr | A | CACA BINDING SITE FOR CHAIN A | S - 679 |
Clusters included in this Subclass |
CLUSTER: HA.3.5 |
CLUSTER: HA.4.3 |