Information on SUBCLASS 5.40.1 |
Subclass Accession number: 6420
Subclass: 5.40.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005524 (>50 %) GO:0016301 (>50 %) GO:0016772 (>50 %) GO:0016773 (>50 %) GO:0017076 (>50 %) GO:0030554 (>50 %) GO:0050515 (>50 %) SCOP : 54861 (>50 %) 55060 (>50 %) 89950 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 16.7 +/- 15.8 Average RMSD (Å) : 0.233 +/- 0.058 Consensus geometry
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Consensus Sequence: | hXcXGXhhX |
(φψ)-conformation: | pbeaewpbb |
Pattern: | x | [LM] | x | [DG] | [GST] | [G] | [APS] | [ACW] | [FLV] | [FK] | [AGV] | [EKL] |
Conservation: | -0.952 | 0.868 | -0.587 | 0.582 | -0.295 | 2.699 | -0.295 | -0.222 | -0.222 | -0.108 | -0.660 | -0.806 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1oj4_A_235 | 1oj4 | A | 236 | 247 | RLTGTGACVFAE | EE-TTSS-EEEE | bxbeaewxbbbx |
1pb1_A_256 | 1pb1 | A | 256 | 267 | ELIDGGPWLKVK | EE-TTSS-EEEE | bpbeaewxbbbx |
1uek_A_226 | 1uek | A | 229 | 240 | LMSGSGSAFFGL | EE-TTSS-EEEE | bxxeaewxbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oj4_A_235 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | G - 239 |
1oj4_A_235 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | G - 239 |
1oj4_A_235 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | T - 240 |
1oj4_A_235 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | T - 240 |
1oj4_A_235 | 1oj4 | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | G - 241 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | L - 257 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | I - 258 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | D - 259 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | G - 260 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | G - 261 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | P - 262 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | W - 263 |
1pb1_A_256 | 1pb1 | A | GOLGLYCEROL | L - 264 |
Clusters included in this Subclass |
CLUSTER: HA.5.238 |