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Information on SUBCLASS 5.40.1
Subclass Accession number: 6420
Subclass: 5.40.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005524 (>50 %)  GO:0016301 (>50 %)  GO:0016772 (>50 %)  GO:0016773 (>50 %)  GO:0017076 (>50 %)  GO:0030554 (>50 %)  GO:0050515 (>50 %)  
SCOP : 54861 (>50 %)  55060 (>50 %)  89950 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 16.7 +/- 15.8
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hXcXGXhhX
(φψ)-conformation: pbeaewpbb
Pattern: x[LM]x[DG][GST][G][APS][ACW][FLV][FK][AGV][EKL]
Conservation:-0.9520.868-0.5870.582-0.2952.699-0.295-0.222-0.222-0.108-0.660-0.806
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1oj4_A_2351oj4   A236247RLTGTGACVFAEEE-TTSS-EEEEbxbeaewxbbbx
1pb1_A_2561pb1   A256267ELIDGGPWLKVKEE-TTSS-EEEEbpbeaewxbbbx
1uek_A_2261uek   A229240LMSGSGSAFFGLEE-TTSS-EEEEbxxeaewxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1oj4_A_2351oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL G - 239
1oj4_A_2351oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 239
1oj4_A_2351oj4   A     CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL T - 240
1oj4_A_2351oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 240
1oj4_A_2351oj4   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 241
1pb1_A_2561pb1   A     GOLGLYCEROL L - 257
1pb1_A_2561pb1   A     GOLGLYCEROL I - 258
1pb1_A_2561pb1   A     GOLGLYCEROL D - 259
1pb1_A_2561pb1   A     GOLGLYCEROL G - 260
1pb1_A_2561pb1   A     GOLGLYCEROL G - 261
1pb1_A_2561pb1   A     GOLGLYCEROL P - 262
1pb1_A_2561pb1   A     GOLGLYCEROL W - 263
1pb1_A_2561pb1   A     GOLGLYCEROL L - 264

Clusters included in this Subclass
CLUSTER: HA.5.238