Information on SUBCLASS 4.2.3 |
Subclass Accession number: 643
Subclass: 4.2.3 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 15.6 +/- 16.7 Average RMSD (Å) : 0.515 +/- 0.157 Consensus geometry
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Consensus Sequence: | XXpcXpXh |
(φψ)-conformation: | bbaagpbb |
Pattern: | x | [CFIVY] | x | x | [adeknqs] | [DKNST] | [GQS] | x | [afiklv] | [FGILMVWY] | x | [afgilpy] | x |
Conservation: | -0.247 | 0.656 | -0.601 | -0.667 | -0.250 | 1.573 | 2.504 | -0.642 | -0.363 | -0.034 | -0.514 | -0.912 | -0.503 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a1x_*_77 | 1a1x | - | 77 | 89 | RYMDNNSRLWQIQ | EEEETTS-EEEEE | bbbxaavxbbxxa |
1b34_A_14 | 1b34 | A | 16 | 28 | TIELKNGTQVHGT | EEEETT--EEEEE | bxxxaavpbbxbb |
1ckm_A_243 | 1ckm | A | 246 | 258 | IIMSEDGTIGIFD | EE-STT--EEEEE | xxabaavxxbbxb |
1d3b_A_17 | 1d3b | A | 19 | 31 | TCETNTGEVYRGK | EEEETTS-EEEEE | bbbxaavxbbbex |
1d3b_B_16 | 1d3b | B | 18 | 30 | RCILQDGRIFIGT | EEEETT--EEEEE | bbbxaavxbbbbx |
1e4e_A_286 | 1e4e | A | 293 | 305 | MFLQDNGRIVLNE | EEE-TT--EEEEE | bbbxaavxxbxab |
1fl2_A_303 | 1fl2 | A | 304 | 316 | QIETASGAVLKAR | EEEETTS-EEEEE | bbxbaagxbbbba |
1hk9_A_22 | 1hk9 | A | 23 | 35 | SIYLVNGIKLQGQ | EEEETTS-EEEEE | bbxxaavxbbbeb |
1jsg_*_25 | 1jsg | - | 25 | 37 | VYLDEKQHAWLPL | EEEETT--EEEEE | bbbbaavxxbbxa |
1jsg_*_84 | 1jsg | - | 84 | 95 | .YRSSDSSFWRLV | .EEETTS-EEEEE | .bbxaavxbbxxa |
1kq1_A_21 | 1kq1 | A | 23 | 35 | TVFFLNGFQMKGV | EEEETTS-EEEEE | bxbxaavxbbbbb |
1m5q_1_23 | 1m5q | 1 | 25 | 37 | QVVLSNGEVYKGV | EEEETTS-EEEEE | bbxbaavxbbbbx |
1m6i_A_242 | 1m6i | A | 242 | 254 | MVKLNDGSQITYE | EEEETTS-EEEEE | bbbxaagpbbxba |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4e_A_286 | 1e4e | A | AC1PHY BINDING SITE FOR CHAIN A | R - 290 |
Clusters included in this Subclass |
CLUSTER: HA.3.57 |
CLUSTER: HA.4.41 |
CLUSTER: HA.5.108 |