Logo
Information on SUBCLASS 6.11.1
Subclass Accession number: 6443
Subclass: 6.11.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 38.5 +/- 25.9
Average RMSD (Å) : 0.490 +/- 0.137

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: LpppTXFppW
(φψ)-conformation: bbaaallabb
Pattern: [C][aflv][aegs][LV][dehkrst][dkrs][ehsw][ET][ADEGN][FY][hqrt][dkrst][W]x[ADNV]x
Conservation:2.009-0.616-0.5150.297-0.612-0.646-0.5990.311-0.3580.801-0.420-0.5182.592-0.690-0.375-0.659
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gz2_A_1131gz2   A113128CAALRDEEAFTSWAAREEEE-TTTTSS-EEEEbbbxxaaalvabbbxb
1iod_A_1021iod   A102117CLGVHIETGFHKWENFEEEE-GGGTS-S-EEEbbbbbaaavvaxxbxb
1ixx_A_1021ixx   A102117CLGLEKETDFRKWVNIEEEE-GGGTT-S-EEEbbbxbaaallabxbxb
1j34_A_1021j34   A102117CLGLEKETGFRKWVNIEEEE-GGGTT-S-EEEbbbxbaaavlabxbxb
1jwi_A_1001jwi   A100115CFGLDVHTEYRTWTDLEEEE-GGGTTSSEEEEbbbxxaaalvabbbxb
1jzn_A_1061jzn   A106121CVELVSLTGYRLWNDQEEEE-GGGTT-SEEEEbbbxxaaavvabbbxb
1qdd_A_1151qdd   A115130CVSLTSSTGFQKWKDVEEEEEGGGTT-SEEEEbbbxbaaavvabbbxb
1ukm_A_1041ukm   A104119CQGLTKWTNFHDWNNIEEEEEGGGTS-SEEEEbbbxbaaalvaxbbxb
1umr_A_1041umr   A104119CSLLKKETGFRKWFVAEEEEEGGGTT-S-EEExbbbbaaavlabbbxb
1uv0_A_1201uv0   A120135CASLSRSTAFLRWKDYEEEEEGGGTT-SEEEEbbbxbaaavlabxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gz2_A_1131gz2   A     SEPPHOSPHOSERINE A - 121
1iod_A_1021iod   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID N - 116
1iod_A_1021iod   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID F - 117
1jzn_A_1061jzn   A     GALD-GALACTOSE E - 108
1jzn_A_1061jzn   A     GLCGLUCOSE L - 112
1jzn_A_1061jzn   A     GLCGLUCOSE N - 119
1jzn_A_1061jzn   A     GALD-GALACTOSE N - 119
1jzn_A_1061jzn   A     CACALCIUM ION N - 119
1jzn_A_1061jzn   A     GALD-GALACTOSE D - 120
1jzn_A_1061jzn   A     CACALCIUM ION D - 120
1jzn_A_1061jzn   A     GALD-GALACTOSE Q - 121
1jzn_A_1061jzn   A     CACALCIUM ION Q - 121
1ukm_A_1041ukm   A     CRYPROPANE-1,2,3-TRIOL N - 117
1ukm_A_1041ukm   A     CRYPROPANE-1,2,3-TRIOL N - 118
1ukm_A_1041ukm   A     CRYPROPANE-1,2,3-TRIOL I - 119

Clusters included in this Subclass
CLUSTER: HA.7.39
CLUSTER: HA.8.15
CLUSTER: HA.9.37