Information on SUBCLASS 6.13.1 |
Subclass Accession number: 6447
Subclass: 6.13.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 20.8 +/- 19.2 Average RMSD (Å) : 0.588 +/- 0.461 Consensus geometry
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Consensus Sequence: | XXhpXpGcXh |
(φψ)-conformation: | bbabaagpbb |
Pattern: | x | x | [dkpr] | [ailv] | [DGNS] | x | x | [AG] | [DGKT] | x | [AFILTV] |
Conservation: | 0.224 | -1.089 | -0.284 | 0.079 | 0.615 | -0.774 | -0.709 | 2.513 | 0.446 | -0.794 | -0.226 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cz3_A_143 | 1cz3 | A | 148 | 158 | MRRLNERGTLF | EEE-SSS--EE | bbxabaagpbb |
1e29_A_9 | 1e29 | A | 9 | 19 | TIPLDEAGGTT | EEESSSSS-EE | bbxabaagxbb |
1f1c_A_9 | 1f1c | A | 9 | 19 | TFPINAQGDTA | EEE-STT--EE | bbxabaavpbb |
1gy7_A_62 | 1gy7 | A | 71 | 81 | AQPASPYGDVL | EEESSTTS-EE | bbxabaavxbb |
1hss_A_103 | 1hss | A | 103 | 112 | .IVVDASGDGA | .EE-STT--EE | .bbabaavpxb |
1mz4_A_8 | 1mz4 | A | 9 | 19 | TVPLNSEGKTI | EEESSTTS-EE | xbxabaagxbb |
1q1j_L_84 | 1q1j | L | 90 | 100 | TWDSGLSADWV | EE-SSTT--EE | bbxaxaalxxb |
2bce_*_16 | 2bce | - | 17 | 27 | NKKLSLFGDSV | EEE--TTS-EE | bbxabaavxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | P - 11 |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | N - 13 |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | S - 14 |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | E - 15 |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | G - 16 |
1mz4_A_8 | 1mz4 | A | GOLGLYCEROL | K - 17 |
Clusters included in this Subclass |
CLUSTER: HA.6.53 |