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Information on SUBCLASS 6.14.1
Subclass Accession number: 6448
Subclass: 6.14.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 55.1 +/- 30.7
Average RMSD (Å) : 0.350 +/- 0.307

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXXpXpGXXp
(φψ)-conformation: lbpbaaepbb
Pattern: [DGN][IVW][QY][AEQR][TV]x[RS][ITVY][NP][AQ][EP][NS][iv]x[G][IMT][akr][RT][CF][dknqy][PQ][AFY][SW]
Conservation:0.097-0.4210.819-0.5920.413-1.6550.090-0.6560.333-0.0860.8190.573-0.488-1.4152.838-0.550-1.1330.1710.494-1.4570.3320.0831.390
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ex0_A_3911ex0   A391413GWQAVDSTPQENSDGMYRCGPASEEEEEEEEEEE-SSSEEEEEEEEexbxbbaxwbxbaaexbpbewbx
1f5j_A_1161f5j   A119141DIYRTTRVNQPSIVGTATFDQYWEEEEEEEEEE--TTSSEEEEEEExbbbbbbblbxbaaepbbbxbbb
1h1a_A_1141h1a   A117139NIYRTQRVNAPSIEGTKTFYQYWEEEEEEEEEE--TTSSEEEEEEExbbbbbbblbxbaaexbbbxbbb
1h4g_A_1201h4g   A123145DIYETLRVNQPSIKGIATFKQYWEEEEEEEEEE--TTSSEEEEEEExbbbbbbblbwbaaexbbbxbbb
1hix_A_1121hix   A115137DVYQTTRVNAPSVEGTKTFNQYWEEEEEEEEEE--TTSSEEEEEEExbbbbbxblbxbaaepbbbxbbb
1igo_A_1191igo   A122144DIYETTRINQPSIIGIATFKQYWEEEEEEEEEE--TTSSEEEEEEExbbbbbbblbwbaaepbbbxbbb
1m4w_A_1121m4w   A115137DIYETWRYNAPSIEGTRTFQQFWEEEEEEEEEE--TTSSEEEEEEExbbbbbbxlbwbaaexbbbxbbb
1xyo_A_1131xyo   A116138DIYRTQRVNQPSIIGTATFYQYWEEEEEEEEEE--TTSSEEEEEEExxbbbxbblbwbaaexbbbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ex0_A_3911ex0   A     PGO1,2-PROPANEDIOL D - 404
1ex0_A_3911ex0   A     PGO1,2-PROPANEDIOL Y - 407
1ex0_A_3911ex0   A     PGO1,2-PROPANEDIOL R - 408
1h1a_A_1141h1a   A     GOLGLYCEROL R - 123
1h1a_A_1141h1a   A     GOLGLYCEROL A - 126
1h1a_A_1141h1a   A     GOLGLYCEROL P - 127
1h1a_A_1141h1a   A     GOLGLYCEROL S - 128
1h1a_A_1141h1a   A     GOLGLYCEROL I - 129
1h1a_A_1141h1a   A     GOLGLYCEROL F - 135
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE R - 129
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE Q - 132
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE P - 133
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE S - 134
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE I - 135
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE F - 141
1h4g_A_1201h4g   A     FXP1,2,-DEOXY-2-FLUORO-4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE Q - 143
1m4w_A_1121m4w   A     MANALPHA-D-MANNOSE N - 123
1m4w_A_1121m4w   A     MANALPHA-D-MANNOSE A - 124
1m4w_A_1121m4w   A     NAGN-ACETYL-D-GLUCOSAMINE P - 125
1m4w_A_1121m4w   A     MANALPHA-D-MANNOSE P - 125
1m4w_A_1121m4w   A     GOLGLYCEROL P - 125
1m4w_A_1121m4w   A     GOLGLYCEROL S - 126
1m4w_A_1121m4w   A     GOLGLYCEROL I - 127
1m4w_A_1121m4w   A     NAGN-ACETYL-D-GLUCOSAMINE T - 130
1m4w_A_1121m4w   A     MANALPHA-D-MANNOSE T - 130
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1a_A_1141h1a   A GOLGOL BINDING SITE FOR CHAIN AR - 123
1h1a_A_1141h1a   A GOLGOL BINDING SITE FOR CHAIN AP - 127
1h1a_A_1141h1a   A GOLGOL BINDING SITE FOR CHAIN AS - 128

Clusters included in this Subclass
CLUSTER: HA.5.80