Information on SUBCLASS 6.23.1 |
Subclass Accession number: 6458
Subclass: 6.23.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 20.0 +/- 22.9 Average RMSD (Å) : 0.880 +/- 0.277 Consensus geometry
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Consensus Sequence: | XXGppGppXh |
(φψ)-conformation: | bbeppgapbb |
Pattern: | [fi] | [AEGT] | x | x | [CKLV] | [G] | [KQT] | [DERS] | [GP] | [DNS] | [hmq] | x | x | [tvy] | [AIVY] | [FILY] |
Conservation: | -0.370 | -0.547 | -0.675 | -0.594 | -0.733 | 3.148 | 0.117 | -0.173 | 1.163 | 0.719 | -0.278 | -0.895 | -0.516 | -0.445 | -0.112 | 0.190 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c39_A_34 | 1c39 | A | 34 | 49 | FESTVGQSPDMYSYVF | EEEEE--TT--EEEEE | bbbbbebpwaxbbxbb |
1dp7_P_55 | 1dp7 | P | 55 | 70 | RTRRLGTRGNSKYHYY | EEEEESSTT--EEEEE | bbbbbexpvaxbxbxx |
1ntv_A_125 | 1ntv | A | 126 | 141 | FGYVCGKEGNHRFVAI | EEEEESSTT--EEEEE | bbbxbexpvaxbbbbb |
2aaa_*_393 | 2aaa | - | 394 | 409 | IAMAKGTSGSQVITVL | EEEEESSTTT-EEEEE | bbbbbeppvapxbbbb |
7taa_*_393 | 7taa | - | 394 | 409 | IAMRKGTDGSQIVTIL | EEEEESSTTS-EEEEE | bbbbbeppgaxxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | P - 42 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | D - 43 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | M - 44 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | Y - 45 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | Y - 47 |
1dp7_P_55 | 1dp7 | P | PEGDI(HYDROXYETHYL)ETHER | R - 55 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | T - 56 |
1dp7_P_55 | 1dp7 | P | PEGDI(HYDROXYETHYL)ETHER | T - 56 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | R - 57 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | R - 58 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | Y - 67 |
1ntv_A_125 | 1ntv | A | PO4PHOSPHATE ION | K - 142 |
Clusters included in this Subclass |
CLUSTER: HA.5.112 |