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Information on SUBCLASS 6.39.1
Subclass Accession number: 6474
Subclass: 6.39.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.8 +/- 11.3
Average RMSD (Å) : 1.033 +/- 0.321

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXXcppXpp
(φψ)-conformation: bbpplbapbb
Pattern: xx[GV]x[GI][FK]x[AS][GN][RST][NST]x[NQY][NQY][GPW][VWY][FLM]
Conservation:-1.426-0.7220.329-0.440-1.0440.075-1.2851.5112.335-0.1590.827-0.474-0.159-0.159-0.7220.6860.827
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m6k_A_2081m6k   A212228KTGAGFTANRTLQNGWFEEEEEE-TTSS-EEEEEbxbbbxxpvbaxbbbbb
1qwy_A_2421qwy   A243259NQVTIKEANSNNYQWYMEEEEEEETTSSEEEEEExbbbbxxplbabbbbbb
1qwz_A_711qwz   A7187IVGWIKLSGTSLNYPVLEEEEEE-TTSS-EEEEExabbbbbpvbaxbbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m6k_A_2081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 212
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL T - 213
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 214
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL A - 215
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 216
1qwy_A_2421qwy   A     ZNZINC ION H - 260

Clusters included in this Subclass
CLUSTER: HA.5.191