ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 7.9.1

Subclass Accession number: 6491
Subclass: 7.9.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 9.5 +/- 11.6
Average RMSD (Å) : 1.371 +/- 0.335

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXpXXXXXhX
(φψ)-conformation:	bbpbaalppbb

Pattern:	x	[afilvw]	x	x	x	[DEPQS]	[aepst]	[DGNSV]	[GRT]	x	x	[afipv]	[ckrty]	x	x
Conservation:	1.001	-0.275	-0.431	-0.499	-0.486	1.222	0.443	0.493	2.658	-0.855	-1.130	-0.738	-0.351	-0.638	-0.413

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ewq_A_708	1ewq	A	713	727	VAAREEAGGLVFYHQ	EEEE--SSS-EEEEE	bbbbxbaaNbbxbax
1ix2_A_79	1ix2	A	84	98	DWRAVSSDTHPITGN	EEEE--TT---EEEE	bbbbbbaavbpbbbb
1lwd_A_151	1lwd	A	154	168	KIVFTPKDGSSAKQW	EEEE--TT----EEE	bbbbbpaavxpxbbb
1nb4_A_369	1nb4	A	370	384	VSVAHDASGKRVYYL	EEEE--TT---EEEE	xbbbbbaavxpbbbx
1ng2_A_182	1ng2	A	184	198	EVVEKSESGWWFCQM	EEEE--TTS--EEEE	bxabxbaavbbxbbx
1nrg_A_215	1nrg	A	217	231	EFWQGQTNRLHDRIV	EEEE--TTS--EEEE	bbbbxbaavxxxbbb
1nw3_A_6	1nw3	A	6	20	ELRLKSPVGAEPAVY	EEEE--TTS---EEE	bbbbxxaavxxxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	K - 709
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	G - 720
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	G - 721
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	L - 722
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	V - 723
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	F - 724
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	Y - 725
1ewq_A_708	1ewq	A	MSESELENOMETHIONINE	H - 726
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	G - 79
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	T - 80
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	Y - 81
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	R - 82
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	W - 85
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	R - 86
1ix2_A_79	1ix2	A	MSESELENOMETHIONINE	A - 87

Clusters included in this Subclass

CLUSTER: HA.7.32