ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 7.13.1

Subclass Accession number: 6495
Subclass: 7.13.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 30.6 +/- 28.0
Average RMSD (Å) : 0.340 +/- 0.152

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hpXcppXXpXA
(φψ)-conformation:	bbabapababb

Pattern:	[AG]	x	[FLW]	[FLMY]	[HR]	[aci]	[DKN]	[EGQS]	[RT]	x	[HW]	[DRT]	[ILT]	[A]	[ILV]	[AQT]
Conservation:	0.537	-1.358	-0.011	-0.206	1.500	-1.330	0.054	-0.658	0.488	-1.036	1.499	-0.897	-0.188	1.774	0.553	-0.723

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f1u_A_188	1f1u	A	190	205	AAWMHRKQTVHDTALT	EEEEESSSSS-SEEEE	bbbbbaxabababbbb
1kw3_B_180	1kw3	B	184	199	AHFLHCNGRHHTIALA	EEEEESSSBS-SEEEE	xbbbbNbaxababbbb
1kw3_B_37	1kw3	B	37	52	AALYRADQRAWRIAVQ	EEEEESSSBS-SEEEE	bxbbbabaxababbbb
1lkd_A_182	1lkd	A	185	200	AYFLHCNERHHTLAIA	EEEEESSSBS-SEEEE	bbbbbabaxababbbb
1lkd_A_38	1lkd	A	38	53	GDLFRIDSRAWRIAVQ	EEEEESSSBS-SEEEE	exbbbabaxababbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f1u_A_188	1f1u	A	MW2MANGANESE DIHYDRATE ION	W - 192
1f1u_A_188	1f1u	A	MW2MANGANESE DIHYDRATE ION	H - 200
1f1u_A_188	1f1u	A	MW2MANGANESE DIHYDRATE ION	A - 203
1kw3_B_180	1kw3	B	FE2FE (II) ION	H - 194
1lkd_A_182	1lkd	A	P6GHEXAETHYLENE GLYCOL	V - 183
1lkd_A_182	1lkd	A	BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL	A - 185
1lkd_A_182	1lkd	A	FE2FE (II) ION	F - 187
1lkd_A_182	1lkd	A	BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL	F - 187
1lkd_A_182	1lkd	A	FE2FE (II) ION	H - 189
1lkd_A_182	1lkd	A	FE2FE (II) ION	H - 195
1lkd_A_182	1lkd	A	BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL	H - 195

Clusters included in this Subclass

CLUSTER: HA.6.90