Logo
Information on SUBCLASS 1.1.4
Subclass Accession number: 65
Subclass: 1.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>50 %)  1.1.1 (>50 %)  
GO : GO:0016614 (>75 %)  GO:0016616 (>75 %)  
SCOP : 48725 (>75 %)  48726 (>75 %)  48942 (>75 %)  51734 (>75 %)  51735 (>75 %)  51751 (>75 %)  
 Number of loops: 49

Average sequence ID (%) : 15.7 +/- 17.8
Average RMSD (Å) : 0.494 +/- 0.165

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: phXhX
(φψ)-conformation: aalbb
Pattern: [acnpstv][adegkqrst][adeknqrst]x[degknqr][acfgikltv]xx
Conservation:0.4590.1020.433-1.0821.872-0.063-1.325-0.396
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_1421a79   A151158AHSVRKKLHHHTT-EEaaaalbxb
1a7t_A_571a7t   A6875TDSLHAKVHHHH--EEaaaalbbx
1a99_A_3021a99   A309316SDHVFYANHHHH--EEaaaavbxx
1aky_*_171aky   -2532QERFHAAHHHHH--EEaaaalxxx
1bu6_O_4161bu6   O423430SDILGTRVHHHHTSEEaaaavbxb
1c3c_A_1921c3c   A199206LSYLGLKPHHHTT-EEaaaavbbx
1dbx_A_1411dbx   A145152AKVLGAEFHHHHT-EEaaaavxbx
1doz_A_2721doz   A277284TDDIGASYHHHHT-EEaaaavxxb
1dp4_A_1631dp4   A176183RERLNITVHHHH--EEaaaavxxb
1drk_*_1361drk   -149156VAAHKFNVHHHHT-EEaaaalxxx
1ezv_A_791ezv   A8592AAKEGLALHHHTT-EEaaaavbbb
1f46_A_941f46   A109116ADEVGGVVHHHHT-EEaaaavbbx
1fo6_A_2121fo6   A224231SYQNGAWSHHHTT-EEaaaalbxb
1g8t_A_791g8t   A8087NAALKVDRHHHH-EEEaaaalbbx
1gpj_A_2011gpj   A208215ARDLGGEAHHHHT-EEaaaavbbx
1gs5_A_1611gs5   A169176AATLGADLHHHHT-EEaaaavxxb
1h6d_A_1631h6d   A170177AFKAGKHVHHHTT-EEaaaavbxb
1hh1_A_701hh1   A8087ARKSGGSLHHHHT-EEaaaavxxb
1itw_A_2291itw   A243250AKKQGVLLHHHHT-EEaaaavbxx
1j18_A_3131j18   A320327FKSAKLDVHHHTT-EEaaaalbxb
1j31_A_1831j31   A185192ALENRVYTHHHHT-EEaaaalbxb
1jo0_A_571jo0   A6875VRETKAAQHHHH--EEaaaavxxx
1jva_A_5161jva   A526533AEKLNLCAHHHTT-EEaaaalbbx
1jyk_A_671jyk   A6976KEKYGVRLHHHH--EEaaaavxbb
1kl1_A_1801kl1   A187194ADEVGAYLHHHHT-EEaaaavbxb
1kob_A_3591kob   A359366PQEYQIYDHHHHTEEEaaaalbbx
1lh0_A_11661lh0   A11711178ERDYGCKVHHHH--EEaaaalbbx
1lst_*_291lst   -3845CKRMQVKCHHHHT-EEaaaavbxb
1m7x_A_3151m7x   A325332AHAAGLNVHHHTT-EEaaaavbxb
1mkm_A_1681mkm   A178185IRKRGYAVHHHHSSEEaaaavbbb
1n0w_A_2531n0w   A256263ADEFGVAVHHHH--EEaaaavxxb
1o4s_A_1811o4s   A191198AKKRNFYIHHHHT-EEaaaalbxb
1ofu_X_1381ofu   X148155AQLGQAQSHHHHT-EEaaaalbbb
1os1_A_4181os1   A429436MQAAGAQAHHHHT-EEaaaavxbb
1pq4_A_2471pq4   A250257ARDYNLVQHHHTT-EEaaaalbbx
1pq4_A_2961pq4   A302309AAEIGAGVHHHHT-EEaaaavbbb
1qe3_A_1211qe3   A124131AAQGEVIVHHHHT-EEaaaalbxb
1qxy_A_361qxy   A4754FEEYGAISHHHHT-EEaaaavbbp
1qz3_A_941qz3   A101108AKDGRAVVHHHHTSEEaaaalbxb
1qz9_A_1841qz9   A191198SHECGALAHHHHT-EEaaaagxxb
1r0v_A_2721r0v   A282289AQNVRKRMHHHTT-EEaaaalbxx
1r9c_A_151r9c   A2330EGVFDAREHHHH--EEaaaalpbx
1rhy_A_1391rhy   A149156AFAAGVTLHHHHT-EEaaaavbbb
1sx5_A_371sx5   A5663AEKHGYIVHHHTT-EEaaaavxxb
1urs_A_401urs   A5461AKAHGDKVHHHH--EEaaaagxxb
1vjo_A_1691vjo   A173180CREFGTLLHHHHT-EEaaaavbxx
1vk3_A_2411vk3   A250257VAKGNLGAHHHTT-EEaaaalbbb
1vk3_A_4151vk3   A430437TLSVGAEPHHHTT-EEaaaavxxp
2dap_*_952dap   -106113ATAAGNVAHHHHT-EEaaaavbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a99_A_3021a99   A     PUT1,4-DIAMINOBUTANE Y - 314
1aky_*_171aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE K - 17
1aky_*_171aky   *     IMDIMIDAZOLE K - 17
1aky_*_171aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 18
1aky_*_171aky   *     IMDIMIDAZOLE G - 18
1aky_*_171aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 19
1aky_*_171aky   *     IMDIMIDAZOLE T - 19
1aky_*_171aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Q - 20
1aky_*_171aky   *     IMDIMIDAZOLE A - 21
1aky_*_171aky   *     IMDIMIDAZOLE H - 32
1aky_*_171aky   *     IMDIMIDAZOLE A - 34
1doz_A_2721doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED E - 272
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) A - 137
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) A - 138
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) R - 141
1g8t_A_791g8t   A     SULSULFATE ANION D - 86
1g8t_A_791g8t   A     SULSULFATE ANION R - 87
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED R - 87
1g8t_A_791g8t   A     SULSULFATE ANION G - 88
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 88
1g8t_A_791g8t   A     SULSULFATE ANION H - 89
1g8t_A_791g8t   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED H - 89
1gs5_A_1611gs5   A     NLGN-ACETYL-L-GLUTAMATE A - 161
1gs5_A_1611gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 161
1gs5_A_1611gs5   A     MGMAGNESIUM ION A - 161
1gs5_A_1611gs5   A     NLGN-ACETYL-L-GLUTAMATE D - 162
1gs5_A_1611gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER D - 162
1gs5_A_1611gs5   A     MGMAGNESIUM ION D - 162
1gs5_A_1611gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 179
1gs5_A_1611gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER S - 180
1h6d_A_1631h6d   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 163
1j31_A_1831j31   A     MSESELENOMETHIONINE I - 183
1j31_A_1831j31   A     MSESELENOMETHIONINE R - 184
1j31_A_1831j31   A     MSESELENOMETHIONINE A - 185
1j31_A_1831j31   A     MSESELENOMETHIONINE L - 186
1j31_A_1831j31   A     MSESELENOMETHIONINE T - 192
1j31_A_1831j31   A     MSESELENOMETHIONINE I - 193
1j31_A_1831j31   A     MSESELENOMETHIONINE T - 194
1jo0_A_571jo0   A     GOLGLYCEROL Q - 61
1jo0_A_571jo0   A     GOLGLYCEROL I - 64
1jo0_A_571jo0   A     GOLGLYCEROL N - 65
1jo0_A_571jo0   A     GOLGLYCEROL A - 66
1jo0_A_571jo0   A     GOLGLYCEROL V - 68
1jo0_A_571jo0   A     GOLGLYCEROL R - 69
1jo0_A_571jo0   A     GOLGLYCEROL Q - 75
1kl1_A_1801kl1   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 197
1mkm_A_1681mkm   A     ZNZINC ION D - 186
1n0w_A_2531n0w   A     MSESELENOMETHIONINE L - 253
1n0w_A_2531n0w   A     MSESELENOMETHIONINE R - 254
1n0w_A_2531n0w   A     MSESELENOMETHIONINE L - 255
1n0w_A_2531n0w   A     MSESELENOMETHIONINE A - 256
1n0w_A_2531n0w   A     MSESELENOMETHIONINE F - 259
1n0w_A_2531n0w   A     MSESELENOMETHIONINE V - 261
1n0w_A_2531n0w   A     MSESELENOMETHIONINE V - 264
1n0w_A_2531n0w   A     MSESELENOMETHIONINE I - 265
1n0w_A_2531n0w   A     EDO1,2-ETHANEDIOL I - 265
1o4s_A_1811o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 201
1rhy_A_1391rhy   A     HGMERCURY (II) ION S - 142
1rhy_A_1391rhy   A     EMCETHYL MERCURY ION S - 142
1rhy_A_1391rhy   A     EMCETHYL MERCURY ION Q - 146
1sx5_A_371sx5   A     MNMANGANESE (II) ION E - 45
1vjo_A_1691vjo   A     MSESELENOMETHIONINE L - 181
1vjo_A_1691vjo   A     MSESELENOMETHIONINE D - 183
1vjo_A_1691vjo   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 183
1vk3_A_2411vk3   A     MSESELENOMETHIONINE L - 243
1vk3_A_2411vk3   A     MSESELENOMETHIONINE S - 244
1vk3_A_2411vk3   A     MSESELENOMETHIONINE S - 247
1vk3_A_2411vk3   A     MSESELENOMETHIONINE E - 248
1vk3_A_2411vk3   A     MSESELENOMETHIONINE I - 258
1vk3_A_2411vk3   A     MSESELENOMETHIONINE V - 259
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 415
1vk3_A_4151vk3   A     MSESELENOMETHIONINE Y - 416
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 419
1vk3_A_4151vk3   A     MSESELENOMETHIONINE V - 423
1vk3_A_4151vk3   A     MSESELENOMETHIONINE S - 426
1vk3_A_4151vk3   A     MSESELENOMETHIONINE V - 427
1vk3_A_4151vk3   A     MSESELENOMETHIONINE R - 428
1vk3_A_4151vk3   A     MSESELENOMETHIONINE T - 430
1vk3_A_4151vk3   A     MSESELENOMETHIONINE P - 437
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs5_A_1611gs5   A NLGNLG BINDING SITE FOR CHAIN AA - 161

Clusters included in this Subclass
CLUSTER: HE.2.5