Information on SUBCLASS 7.29.1 |
Subclass Accession number: 6511
Subclass: 7.29.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2.1 (>75 %) 2.1.1 (>75 %) 2.1.1.45 GO : GO:0008168 (>75 %) GO:0016741 (>75 %) GO:0042083 (>75 %) SCOP : 55830 (>75 %) 55831 (>75 %) 55832 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 47.0 +/- 8.3 Average RMSD (Å) : 0.333 +/- 0.115 Consensus geometry
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Consensus Sequence: | XpXDRTXXGXh |
(φψ)-conformation: | pbpbaalaebb |
Pattern: | x | [FKR] | [KQ] | [DPS] | [D] | [R] | [T] | x | [TV] | [G] | [TV] | [LY] | [S] | [IKV] | [F] | [G] | [HMY] | x | [AM] | [KR] | [FY] | [DS] |
Conservation: | -1.273 | -1.273 | -0.080 | -0.970 | 1.518 | 0.972 | 0.972 | -0.386 | -0.433 | 1.518 | -0.433 | -0.624 | 0.426 | -1.212 | 1.518 | 1.518 | -0.666 | -1.222 | -0.669 | 0.183 | 0.822 | -0.206 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1hvy_A_45 | 1hvy | A | 45 | 66 | VRKDDRTGTGTLSVFGMQARYS | EEE--TTSS-EEEEEEEEEEEE | bpbxbaavaebbbbbMbbbbbx |
1j3k_C_340 | 1j3k | C | 340 | 361 | NKQSDRTGVGVLSKFGYIMKFD | EEE--TTSS-EEEEEEEEEEEE | xxbxbaavaebbbbbvbbbbbx |
1tsy_*_18 | 1tsy | - | 18 | 39 | HFKPDRTHTGTYSIFGHQMRFD | EEE--TTSS-EEEEEEEEEEEE | xxbxbaaUaebbbbbMbbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1hvy_A_45 | 1hvy | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | V - 45 |
1hvy_A_45 | 1hvy | A | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | D - 49 |
1hvy_A_45 | 1hvy | A | D16TOMUDEX | R - 50 |
1hvy_A_45 | 1hvy | A | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | R - 50 |
1hvy_A_45 | 1hvy | A | D16TOMUDEX | T - 51 |
1hvy_A_45 | 1hvy | A | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | T - 51 |
1hvy_A_45 | 1hvy | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | S - 57 |
1hvy_A_45 | 1hvy | A | CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE | V - 58 |
1j3k_C_340 | 1j3k | C | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | D - 344 |
1j3k_C_340 | 1j3k | C | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | R - 345 |
1j3k_C_340 | 1j3k | C | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | T - 346 |
1tsy_*_18 | 1tsy | * | UMP2'-DEOXYURIDINE 5'-MONOPHOSPHATE | R - 23 |
Clusters included in this Subclass |
CLUSTER: HA.6.190 |