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Information on SUBCLASS 8.12.1
Subclass Accession number: 6528
Subclass: 8.12.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 41.2 +/- 31.5
Average RMSD (Å) : 0.200 +/- 0.089

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hhppXphpGXXh
(φψ)-conformation: bbabpllbepbb
Pattern: [ALW][fmr][IL][FY][EK][dqr][DEPT][DNR][FY][nqr][G][NPQR][FMQ][IVY][efr][IL]
Conservation:-0.465-0.9680.4631.6160.578-0.801-0.637-0.1491.392-0.8162.050-0.723-0.624-0.149-1.2750.507
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a45_*_1311a45   -131146WVLYEMTNYRGRQYLLEEEESSSSS-S-EEEEbbbbabxllbepbbxb
1a45_*_411a45   -4257WMLYEQPNFQGPQYFLEEEESSGGG-S-EEEEbbbbabxvvbewbbxb
1a45_*_891a45   -90105LRIYEREDYRGQMVEIEEEESSGGG-S-EEEEbbbbabxlvxexbbbb
1elp_A_421elp   A4257WMIYEQPNYLGPQYFLEEEESSSTT-SSEEEEbbbbabxllbepbbxb
1hdf_A_561hdf   A5873AFIFKDDRFNGNFIRLEEEESSGGG-SSEEEEbbbbabxlvbepbbxb
1m8u_A_421m8u   A4257WMIYEQPNFQGPQYFLEEEESSGGG-SSEEEEbbbbabxlvbewbbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hdf_A_561hdf   A     MSESELENOMETHIONINE A - 58
1hdf_A_561hdf   A     MSESELENOMETHIONINE F - 59
1hdf_A_561hdf   A     CACALCIUM ION F - 59
1hdf_A_561hdf   A     MSESELENOMETHIONINE I - 60
1hdf_A_561hdf   A     CACALCIUM ION I - 60
1hdf_A_561hdf   A     MSESELENOMETHIONINE F - 61
1hdf_A_561hdf   A     CACALCIUM ION F - 61
1hdf_A_561hdf   A     CACALCIUM ION K - 62
1hdf_A_561hdf   A     CACALCIUM ION D - 63
1hdf_A_561hdf   A     CACALCIUM ION D - 64
1hdf_A_561hdf   A     MSESELENOMETHIONINE F - 66
1hdf_A_561hdf   A     CACALCIUM ION F - 66
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hdf_A_561hdf   A CA2CA BINDING SITE FOR RESIDUE A1102K - 62

Clusters included in this Subclass
CLUSTER: HA.7.41