ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.2.1

Subclass Accession number: 6547
Subclass: 9.2.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 58.2 +/- 25.0
Average RMSD (Å) : 0.275 +/- 0.062

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hpCpPHphhGMXh
(φψ)-conformation:	bbpaaaaaagpbb

Pattern:	[G]	[altv]	[Y]	[gklt]	[FVY]	[KY]	[C]	[ADEST]	[P]	[H]	x	[ags]	[AM]	[GN]	[M]	[IKV]	[AGM]	[KLTV]	[ILV]	[aitv]	[V]
Conservation:	1.032	-0.928	1.384	-1.054	-0.405	-0.304	2.087	-0.766	1.384	1.736	-1.065	-0.700	-0.469	0.212	0.680	-0.672	-0.647	-0.911	-0.054	-0.870	0.329

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1adw_A_72	1adw	A	72	92	GLYGVKCTPHFGMGMVGLVQV	EEEEEE-GGGGGGT-EEEEEE	exbxbbbaaaaaavxbbbbbb
1bqk_*_72	1bqk	-	72	92	GVYGVKCTPHYGMGMVGVVQV	EEEEEE-TTTGGGT-EEEEEE	exbxbbxaaaaaavxbbbbxb
1bxu_A_78	1bxu	A	78	98	GTYTYYCEPHRGAGMVGKIVV	EEEEEE-TTTGGGT-EEEEEE	ebbbbbxaaaaaavxbbbbbb
1byp_A_78	1byp	A	78	98	GTYKFYCAPHAGAGMVGKVTV	EEEEEE-GGGTTTT-EEEEEE	ebbbbbxaaaaaagxbbbbbb
1iuz_*_78	1iuz	-	78	98	GVYGVYCEPHAGAGMKMTITV	EEEEEE-TTTGGGT-EEEEEE	ebbxbbbaaaaaavxbbbbbb
1kdj_*_81	1kdj	-	81	101	GTYTFYCTPHKSANMKGTLTV	EEEEEE-STTGGGT-EEEEEE	ebbxbbxaaaaaalxbbbbbb
1paz_*_72	1paz	-	72	92	GAYLVKCTPHYAMGMIALIAV	EEEEEE-TTTGGGT-EEEEEE	ebbbbbxaaaaaavxbbbbbb
1pcs_*_78	1pcs	-	78	98	GTYTYYCEPHRGAGMVGKVVV	EEEEEE-GGGTTTT-EEEEEE	ebbxbbxaaaaaavxbbbbbb
1plc_*_78	1plc	-	78	98	GEYSFYCSPHQGAGMVGKVTV	EEEEEE-GGGTTTT-EEEEEE	ebbxbbbaaaaaavxbbbbbb
1pmy_*_72	1pmy	-	72	92	GVYGFKCAPHYMMGMVALVVV	EEEEEE-STTTTTT-EEEEEE	ebbbbbxaaaaaavxbbbbbb
2plt_*_78	2plt	-	78	98	GEYGYYCEPHQGAGMVGKIIV	EEEEEE-GGGGGGT-EEEEEE	ebbxbbbaaaaaavxbbbbbb
7pcy_*_78	7pcy	-	78	98	GTYGVYCDPHSGAGMKMTITV	EEEEEE-STTGGGT-EEEEEE	ebbxbbbaaaaaavxbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1adw_A_72	1adw	A	CUCOPPER (II) ION	C - 78
1adw_A_72	1adw	A	CUCOPPER (II) ION	T - 79
1adw_A_72	1adw	A	CUCOPPER (II) ION	P - 80
1adw_A_72	1adw	A	CUCOPPER (II) ION	H - 81
1adw_A_72	1adw	A	CUCOPPER (II) ION	M - 86
1bxu_A_78	1bxu	A	CUCOPPER (II) ION	C - 84
1bxu_A_78	1bxu	A	CUCOPPER (II) ION	E - 85
1bxu_A_78	1bxu	A	CUCOPPER (II) ION	P - 86
1bxu_A_78	1bxu	A	CUCOPPER (II) ION	H - 87
1bxu_A_78	1bxu	A	CUCOPPER (II) ION	M - 92
1byp_A_78	1byp	A	CUCOPPER (II) ION	A - 85
1kdj_*_81	1kdj	*	CUCOPPER (II) ION	C - 87
1kdj_*_81	1kdj	*	CUCOPPER (II) ION	T - 88
1kdj_*_81	1kdj	*	CUCOPPER (II) ION	P - 89
1kdj_*_81	1kdj	*	CUCOPPER (II) ION	H - 90
1kdj_*_81	1kdj	*	CUCOPPER (II) ION	M - 95
1plc_*_78	1plc	*	CUCOPPER (II) ION	S - 85
1pmy_*_72	1pmy	*	CUCOPPER (II) ION	A - 79
7pcy_*_78	7pcy	*	CUCOPPER (II) ION	D - 85

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1bqk_*_72	1bqk	*	COPOXIDIZED COPPER COORDINATION	C - 78
1bqk_*_72	1bqk	*	COPOXIDIZED COPPER COORDINATION	H - 81
1bqk_*_72	1bqk	*	COPOXIDIZED COPPER COORDINATION	M - 86
1iuz_*_78	1iuz	*	COPCOPPER BINDING SITE.	C - 84
1iuz_*_78	1iuz	*	COPCOPPER BINDING SITE.	H - 87
1iuz_*_78	1iuz	*	COPCOPPER BINDING SITE.	M - 92

Clusters included in this Subclass

CLUSTER: HA.8.5