ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.8.1

Subclass Accession number: 6553
Subclass: 9.8.1

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 55.2 +/- 22.8
Average RMSD (Å) : 0.280 +/- 0.045

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hpXpPhphGpPNX
(φψ)-conformation:	bbabppbplpwbb

Pattern:	[eq]	[AV]	[ET]	[V]	[FL]	[PST]	[knr]	[KS]	[P]	[LV]	[ent]	[FL]	[GR]	[EKQ]	[P]	[N]	[ITV]	[L]	[IV]	[C]	[FL]	[IV]	[DS]	[KN]	[FIL]
Conservation:	-1.079	-0.577	-0.469	0.390	-0.216	-0.746	-1.209	-0.441	1.841	-0.281	-1.377	-0.377	-0.399	-0.290	1.841	1.358	-0.659	0.390	0.166	2.809	-0.012	0.156	-0.113	-0.133	-0.574

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fng_A_88	1fng	A	88	112	EVTVLSRSPVNLGEPNILICFIDKF	EEEEEESS---TTS-EEEEEEEEEE	bbbbbxabpxbpvbwbbxbbxbblb
1fv1_A_88	1fv1	A	88	112	EVTVLTNSPVELREPNVLICFIDKF	EEEEEESS---TTS-EEEEEEEEEE	bbbbbbabpxbpvxwbbxbbbbblb
1hdm_A_99	1hdm	A	99	123	IAEVFTLKPLEFGKPNTLVCFVSNL	EEEEEESS---TTS-EEEEEEEEEE	bxbbbbabxpbpvxpbbxbbxbbUx
1iak_A_88	1iak	A	88	112	QATVFPKSPVLLGQPNTLICFVDNI	EEEEEESS---TTS-EEEEEEEEEE	bbbbbxabxxbpvxwbbxbbbbblx
1uvq_A_91	1uvq	A	91	115	EVTVFSKSPVTLGQPNTLICLVDNI	EEEEEESS---TTS-EEEEEEEEEE	bbbbbxabpxbpvbwbbxbbxbblx

PDB ligands within a cut-off distance of 6 Å in this subclass

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uvq_A_91	1uvq	A	AC9GLY BINDING SITE FOR CHAIN A	D - 113

Clusters included in this Subclass