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Information on SUBCLASS 9.20.1
Subclass Accession number: 6565
Subclass: 9.20.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004872 (>50 %)  
SCOP : 48726 (>75 %)  48727 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 24.4 +/- 25.7
Average RMSD (Å) : 0.433 +/- 0.153

Consensus geometry
d (Å): 9 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXhpXXXppXXXp
(φψ)-conformation: bbpbaaalbapbb
Pattern: [CE][AN]x[AFY][HNS][KP][AES][ANS][ST][ST][FK][HV]x[KQR][K]
Conservation:-0.644-0.532-1.048-0.3170.2050.408-0.526-0.4210.7150.672-0.4650.054-1.4360.5182.816
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ac6_A_611ac6   A6276EATYNKEATSFHLQKEEE-BTTTTB--EEEbbbxbaaalbaxxbb
1hyx_H_1941hyx   H195209CNVAHPASSTKVDKKEEEEBGGGTB--EEEbbbbbaaalxapbbx
1i9e_A_631i9e   A6377EAEFSKSNSSFHLRKEEE-BTTTTB--EEEbbbxbaaalbaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE E - 65
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE S - 67
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE S - 69
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 70
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE S - 72
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE H - 74
1i9e_A_631i9e   A     NAGN-ACETYL-D-GLUCOSAMINE R - 76

Clusters included in this Subclass
CLUSTER: HA.8.73